RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 CITED2Q99967 270 aaPredicted RBP3.13□□□□□ -1.91
TMEM39A-204ENST00000468545 GINS3Q9BRX5 216 aa3.13□□□□□ -1.91
TMEM39A-204ENST00000468545 CHRDL1Q9BU40 450 aa3.13□□□□□ -1.91
TMEM39A-204ENST00000468545 C20orf24Q9BUV8 137 aa3.13□□□□□ -1.91
TMEM39A-204ENST00000468545 NPCDR1Q9BY65 106 aa3.13□□□□□ -1.91
TMEM39A-204ENST00000468545 VSIRQ9H7M9 311 aa3.13□□□□□ -1.91
TMEM39A-204ENST00000468545 PEF1Q9UBV8 284 aaKnown RBP3.13□□□□□ -1.91
TMEM39A-204ENST00000468545 WDR83OSQ9Y284 106 aa3.13□□□□□ -1.91
TMEM39A-204ENST00000468545 LSM4Q9Y4Z0 139 aaKnown RBP3.13□□□□□ -1.91
TMEM39A-204ENST00000468545 SELENOKQ9Y6D0 94 aa3.13□□□□□ -1.91
TMEM39A-204ENST00000468545 PXMP4Q9Y6I8 212 aa3.13□□□□□ -1.91
TMEM39A-204ENST00000468545 IGHV4OR15-8A0A075B7B6 117 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 IGKV1OR2-108A0A075B7D4 117 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 IGHV3OR16-13A0A075B7E8 117 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 A0A087WW49 117 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 IGHV3-49A0A0A0MS15 119 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 IGHV3-74A0A0B4J1X5 117 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 TRAV5A0A0B4J249 113 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 IGHV3-66A0A0C4DH42 116 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 A0A1W2PPV4 95 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 TMEM89A2RUT3 159 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 ZNF705EA8MWA4 302 aaPredicted RBP3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 FNDC10F2Z333 226 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 TGOLN2O43493 480 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 COX7A2P2O60397 106 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 PAGE4O60829 102 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 GGCTO75223 188 aaKnown RBP3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 SCGB1D1O95968 90 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 IFNA7P01567 189 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 HSPB1P04792 205 aaKnown RBP3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 IL4P05112 153 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 FABP1P07148 127 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 PRSS2P07478 247 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 CTSGP08311 255 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 SNRPCP09234 159 aaKnown RBP3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 SEC11BP0C7V7 166 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 LINC00869P0C866 280 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 IGLC1P0CG04 106 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 FCGR2BP31994 310 aaPredicted RBP3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 RPL29P47914 159 aaKnown RBP3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 FHITP49789 147 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 NANOS2P60321 138 aaKnown RBP3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 RAB2AP61019 212 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 B2MP61769 119 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 IFITM2Q01629 132 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 RPEL1Q2QD12 228 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 DEFB136Q30KP8 78 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 ACOT6Q3I5F7 207 aaPredicted RBP3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 KRTAP24-1Q3LI83 254 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 SPATA31B1PQ5VZV4 182 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 EIF5AL1Q6IS14 154 aaKnown RBP3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 ZNF343Q6P1L6 599 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 TEX261Q6UWH6 196 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 TOMM20LQ6UXN7 152 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 IQCF2Q8IXL9 164 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 COMMD1Q8N668 190 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 TMEM116Q8NCL8 245 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 KLHL30-AS1Q8NEE0 82 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 ZNF680Q8NEM1 530 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 OR11H1Q8NG94 326 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 OR10G4Q8NGN3 311 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 OR10G9Q8NGN4 311 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 OR10G7Q8NGN6 311 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 OR1N2Q8NGR9 330 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 FAM213BQ8TBF2 198 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 ZNF479Q96JC4 524 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 UBE2E2Q96LR5 201 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 TRGV9Q99603 122 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 FAM110AQ9BQ89 295 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 GGTLC1Q9BX51 225 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 ARV1Q9H2C2 271 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 DNAJC4Q9NNZ3 241 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 SLC39A9Q9NUM3 307 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 UBQLN2Q9UHD9 624 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 ZNF580Q9UK33 172 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 PUS1Q9Y606 427 aaKnown RBP eCLIP3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 F8P00451 2351 aa3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 FN1P02751 2386 aaKnown RBP3.12□□□□□ -1.91
TMEM39A-204ENST00000468545 CELSR1Q9NYQ6 3014 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 A0A1B0GUS0 222 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 PGPEP1LA6NFU8 196 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 LINC01619G3V211 115 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 TEX46H3BTG2 121 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 BMPR1BO00238 502 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 MPDU1O75352 247 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 HYPMO75409 117 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 BRI3O95415 125 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 IGKV1-17P01599 117 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 MBP02144 154 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 LGALS1P09382 135 aaKnown RBP3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 SPP1P10451 314 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 M6PRP20645 277 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 CDX1P47902 265 aaPredicted RBP3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 SULT1A2P50226 295 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 FGF8P55075 233 aaPredicted RBP3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 SYNJ2BPP57105 145 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 RAB14P61106 215 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 YPEL3P61236 119 aaPredicted RBP3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 SELENOTP62341 195 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms