RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 IGLV8-61A0A075B6I0 122 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 IGHV3-72A0A0B4J1Y9 119 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 C7orf66A4D0T2 115 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 OR1I1O60431 355 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 UBL3O95164 117 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 SFT2D2O95562 160 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 CYB5AP00167 134 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 IGLV2-23P01705 113 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 GYPBP06028 91 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 SLC25A6P12236 298 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 TPT1P13693 172 aaKnown RBP3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 HLA-DMBP28068 263 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 KRTAP13-3Q3SY46 172 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 MPV17L2Q567V2 206 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 FAM182AQ5T1J6 154 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 C7orf65Q6ZTY9 151 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 TMEM183AQ8IXX5 376 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 Q8N7P7 452 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 ITLN1Q8WWA0 313 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 DIRC1Q969H9 104 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 FGF23Q9GZV9 251 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 THSD7BQ9C0I4 1608 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 PCNX3Q9H6A9 2034 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 PLEKHH2Q8IVE3 1493 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 NLRC5Q86WI3 1866 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 IGHV1OR15-9A0A0B4J2B8 117 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 FAM24AA6NFZ4 105 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 IGHV3-11P01762 117 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 IGHV3-23P01764 117 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 CD3DP04234 171 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 IGKV1-16P04430 117 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 ASIPP42127 132 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 ZNF678Q5SXM1 525 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 TIFABQ6ZNK6 161 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 RHOXF1Q8NHV9 184 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 CHAC1Q9BUX1 264 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 NPCDR1Q9BY65 106 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 OR5V1Q9UGF6 321 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 CELA1Q9UNI1 258 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 ZC3H13Q5T200 1668 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 DYSFO75923 2080 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 LRRIQ1Q96JM4 1722 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 RBBP6Q7Z6E9 1792 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 ADGRL1O94910 1474 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 FANCD2Q9BXW9 1451 aa3.35□□□□□ -1.87
CCDC88A-210ENST00000468534 ADGRB1O14514 1584 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 RIMBP3CA6NJZ7 1639 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 RIMBP3BA6NNM3 1639 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 RIMBP3Q9UFD9 1639 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 A0A0J9YXY3 114 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 GRIFINA4D1Z8 144 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 INS-IGF2F8WCM5 200 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 IGHV3-13P01766 116 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 GYPAP02724 150 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 SLC25A4P12235 298 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 COX7CP15954 63 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 MRPS36P82909 103 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 RPL18Q07020 188 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 ORMDL3Q8N138 153 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 ITLN2Q8WWU7 325 aaPredicted RBP3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 ZNF414Q96IQ9 312 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 CAMK2N2Q96S95 79 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 CHCHD5Q9BSY4 110 aa3.34□□□□□ -1.87
CCDC88A-210ENST00000468534 PXDNLA1KZ92 1463 aa3.34□□□□□ -1.88
CCDC88A-210ENST00000468534 N4BP2Q86UW6 1770 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 UBR2Q8IWV8 1755 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 RBAKDNA6NC62 111 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 ZFP92A6NM28 416 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 SRRM5B3KS81 715 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 SNCGO76070 127 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 CFDP00746 253 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 NPC2P61916 151 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 HMGN3Q15651 99 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 FAM104BQ5XKR9 115 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 SLC25A26Q70HW3 274 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 FP248Q71RG6 208 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 SPATA12Q7Z6I5 190 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 OSTCQ9NRP0 149 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 PRR34Q9NV39 138 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 COL1A1P02452 1464 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 CEP170Q5SW79 1584 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 ARAP2Q8WZ64 1704 aa3.33□□□□□ -1.88
CCDC88A-210ENST00000468534 ZNF318Q5VUA4 2279 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 IGHV3-43A0A0B4J1X8 118 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 M0R233 179 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 LEPROTO15243 131 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 SSSCA1O60232 199 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 SLC25A14O95258 325 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 HLA-DQA1P01909 254 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 DNAH10OSP0CZ25 163 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 COX6A1P12074 109 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 CDK5R1Q15078 307 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 MIC13Q5XKP0 118 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 HEPN1Q6WQI6 88 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 C3orf56Q8N813 242 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 C10orf105Q8TEF2 133 aa3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 S100A16Q96FQ6 103 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-210ENST00000468534 ZNF714Q96N38 554 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms