RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 HPGDSO60760 199 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 IGHV3-48P01763 117 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 PRM2P04554 102 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 FABP1P07148 127 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 ZNF688P0C7X2 276 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 LIMS3P0CW19 117 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 LIMS4P0CW20 117 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 LGALS3P17931 250 aaKnown RBP2.83□□□□□ -1.96
HMGB1-207ENST00000468384 RAB5AP20339 215 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 CRABP1P29762 137 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 GALR1P47211 349 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 RND2P52198 227 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 SELENOTP62341 195 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 KRR1Q13601 381 aaKnown RBP2.83□□□□□ -1.96
HMGB1-207ENST00000468384 TRAM1Q15629 374 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 PDZD11Q5EBL8 140 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 ZNF684Q5T5D7 378 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 DNM1P34Q6PK57 102 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 PLET1Q6UQ28 207 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 Q6ZVH6 145 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 MRPL52Q86TS9 123 aaKnown RBP2.83□□□□□ -1.96
HMGB1-207ENST00000468384 KRTAP7-1Q8IUC3 87 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 OR51E1Q8TCB6 317 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 SLAMF6Q96DU3 332 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 SLC35E1Q96K37 410 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 HIST1H4GQ99525 98 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 ZNF184Q99676 751 aaPredicted RBP2.83□□□□□ -1.96
HMGB1-207ENST00000468384 RNF5Q99942 180 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 MRPL57Q9BQC6 102 aaKnown RBP2.83□□□□□ -1.96
HMGB1-207ENST00000468384 NXF2Q9GZY0 626 aaKnown RBP2.83□□□□□ -1.96
HMGB1-207ENST00000468384 FGFR1OP2Q9NVK5 253 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 RBFOX1Q9NWB1 397 aaKnown RBP2.83□□□□□ -1.96
HMGB1-207ENST00000468384 RABAC1Q9UI14 185 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 TRBV7-1A0A0A6YYK4 115 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 TRAV1-1A0A0B4J248 108 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 LOC105371267A0A1B0GV96 52 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 PLAC8L1A1L4L8 177 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 ANKRD65E5RJM6 399 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 H0YJX3 145 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 H3BMM0 161 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 J3QRK9 145 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 NRASP01111 189 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 TCRBP04435 133 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 GYPBP06028 91 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 LINC00032P0C843 101 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 PVALBP20472 110 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-207ENST00000468384 BTCP35070 178 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 CAV2P51636 162 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 RPL18AQ02543 176 aaKnown RBP2.82□□□□□ -1.96
HMGB1-207ENST00000468384 C1orf100Q5SVJ3 147 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 C1orf146Q5VVC0 180 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 SDIM1Q6ZPB5 146 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 MBOAT2Q6ZWT7 520 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 S100A7AQ86SG5 101 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 TMEM252Q8N6L7 170 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 ZNF680Q8NEM1 530 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 OR51T1Q8NGJ9 327 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 OR10R2Q8NGX6 335 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 OR10J6PQ8NGY7 276 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 DTD1Q8TEA8 209 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 APH1BQ8WW43 257 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 RNF185Q96GF1 192 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 KIR2DL4Q99706 377 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 C20orf144Q9BQM9 153 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 C1orf50Q9BV19 199 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 METTL9Q9H1A3 318 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 ISG20L2Q9H9L3 353 aaKnown RBP2.82□□□□□ -1.96
HMGB1-207ENST00000468384 DNAJC27Q9NZQ0 273 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 ST3GAL6Q9Y274 331 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 OR51B2Q9Y5P1 312 aa2.82□□□□□ -1.96
HMGB1-207ENST00000468384 IGHV3-74A0A0B4J1X5 117 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 IGKV1D-13A0A0B4J2D9 117 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 FAM159BA6NKW6 160 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 ZNF705GA8MUZ8 300 aaPredicted RBP2.81□□□□□ -1.96
HMGB1-207ENST00000468384 TMEM238C9JI98 176 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 C15orf65H3BRN8 121 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 M0R036 132 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 NDUFA4O00483 81 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 BIRC5O15392 142 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 ZNF780AO75290 641 aaPredicted RBP2.81□□□□□ -1.96
HMGB1-207ENST00000468384 HPRT1P00492 218 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 MT2AP02795 61 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 CD5P06127 495 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 CDK1P06493 297 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 CD14P08571 375 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 IGKV1-13P0DP09 117 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 HIST1H1CP16403 213 aaKnown RBP2.81□□□□□ -1.96
HMGB1-207ENST00000468384 CD164Q04900 197 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 MXD1Q05195 221 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 ZNF266Q14584 549 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 ACSM3Q53FZ2 586 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 COX6B2Q6YFQ2 88 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 ZNF833PQ6ZTB9 187 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 MOB1BQ7L9L4 216 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 CTAGE3PQ8IX95 158 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 Q8IYB0 196 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 C10orf67Q8IYJ2 551 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 TTC9CQ8N5M4 171 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 LINC00337Q8N6G1 96 aa2.81□□□□□ -1.96
HMGB1-207ENST00000468384 OR51S1Q8NGJ8 323 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 119.1 ms