RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 ZNF355PQ9NSJ1 428 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 LY96Q9Y6Y9 160 aa9.1□□□□□ -0.95
USP54-209ENST00000464635 A0A087WWC5 75 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 A0A1B0GV50 99 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 SH2D7A6NKC9 451 aaPredicted RBP9.09□□□□□ -0.95
USP54-209ENST00000464635 IGHV3-48P01763 117 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 ELANEP08246 267 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 ORM2P19652 201 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 DEFA5Q01523 94 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 SPATA31B1PQ5VZV4 182 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 RNF152Q8N8N0 203 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 CYB561D1Q8N8Q1 229 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 CLRN3Q8NCR9 226 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 OR5AU1Q8NGC0 362 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 OR1B1Q8NGR6 318 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 TVP23CQ96ET8 276 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 GPR82Q96P67 336 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 SLC25A39Q9BZJ4 359 aaPredicted RBP9.09□□□□□ -0.95
USP54-209ENST00000464635 TMEM242Q9NWH2 141 aa9.09□□□□□ -0.95
USP54-209ENST00000464635 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.08□□□□□ -0.96
USP54-209ENST00000464635 H3BRN7 92 aa9.08□□□□□ -0.96
USP54-209ENST00000464635 BMPR1BO00238 502 aa9.08□□□□□ -0.96
USP54-209ENST00000464635 HMGB3O15347 200 aaKnown RBP9.08□□□□□ -0.96
USP54-209ENST00000464635 TGOLN2O43493 480 aa9.08□□□□□ -0.96
USP54-209ENST00000464635 OR7C2O60412 319 aa9.08□□□□□ -0.96
USP54-209ENST00000464635 CLEC3BP05452 202 aa9.08□□□□□ -0.96
USP54-209ENST00000464635 HIST1H1EP10412 219 aaKnown RBP9.08□□□□□ -0.96
USP54-209ENST00000464635 PSMB8P28062 276 aa9.08□□□□□ -0.96
USP54-209ENST00000464635 SLC35B1P78383 322 aa9.08□□□□□ -0.96
USP54-209ENST00000464635 PDE6HQ13956 83 aa9.08□□□□□ -0.96
USP54-209ENST00000464635 C1orf194Q5T5A4 169 aa9.08□□□□□ -0.96
USP54-209ENST00000464635 KPRPQ5T749 579 aaPredicted RBP9.08□□□□□ -0.96
USP54-209ENST00000464635 NDUFA11Q86Y39 141 aa9.08□□□□□ -0.96
USP54-209ENST00000464635 BPIFA4PQ86YQ2 179 aa9.08□□□□□ -0.96
USP54-209ENST00000464635 SDF2L1Q9HCN8 221 aa9.08□□□□□ -0.96
USP54-209ENST00000464635 NOTCH3Q9UM47 2321 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 IGHV3-21A0A0B4J1V1 117 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 A0A1W2PRX2 142 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 ZNF253O75346 499 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 TRGV3P03979 118 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 IL4P05112 153 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 S100A9P06702 114 aaKnown RBP9.07□□□□□ -0.96
USP54-209ENST00000464635 NBEAP1P0C6P0 100 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 ADMP35318 185 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 MYCNOSP40205 109 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 MEOX2P50222 304 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 LYZP61626 148 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 FOXE3Q13461 319 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 GUCA2BQ16661 112 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 OXLD1Q5BKU9 147 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 TCTEX1D4Q5JR98 221 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 C9orf152Q5JTZ5 239 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 C10orf99Q6UWK7 81 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 HIST1H2BAQ96A08 127 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 FXYD5Q96DB9 178 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 CCDC140Q96MF4 163 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 OR4F4Q96R69 305 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 NAT8Q9UHE5 227 aa9.07□□□□□ -0.96
USP54-209ENST00000464635 CXorf65A6NEN9 183 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 ZNF98A6NK75 572 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 ZNF727A8MUV8 499 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 C9JCJ5 164 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 H3BQ15 152 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 NDUFA4O00483 81 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 GP9P14770 177 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 RPL7P18124 248 aaKnown RBP9.06□□□□□ -0.96
USP54-209ENST00000464635 UBE2L3P68036 154 aaKnown RBP9.06□□□□□ -0.96
USP54-209ENST00000464635 TMEM241Q24JQ0 296 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 CST9LP1Q5W188 147 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 TEX38Q6PEX7 206 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 MYOZ3Q8TDC0 251 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 SMIM12Q96EX1 92 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 RABAC1Q9UI14 185 aa9.06□□□□□ -0.96
USP54-209ENST00000464635 OR2T8A6NH00 312 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 MRPS12O15235 138 aaKnown RBP9.05□□□□□ -0.96
USP54-209ENST00000464635 TPPP2P59282 170 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 TAS2R60P59551 318 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 MORN5Q5VZ52 161 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 IQCF2Q8IXL9 164 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 OR4F17Q8NGA8 305 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 SMIM7Q9BQ49 75 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 CHRDL1Q9BU40 450 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 CTDSP1Q9GZU7 261 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 PARLQ9H300 379 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 ZFAND3Q9H8U3 227 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 CLEC5AQ9NY25 188 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 YTHDF2Q9Y5A9 579 aaKnown RBP9.05□□□□□ -0.96
USP54-209ENST00000464635 PUS1Q9Y606 427 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP54-209ENST00000464635 U3KQE9 123 aa9.05□□□□□ -0.96
USP54-209ENST00000464635 TRAV5A0A0B4J249 113 aa9.04□□□□□ -0.96
USP54-209ENST00000464635 C7orf77A4D0Y5 90 aa9.04□□□□□ -0.96
USP54-209ENST00000464635 IGLC2P0DOY2 106 aa9.04□□□□□ -0.96
USP54-209ENST00000464635 CRYBB3P26998 211 aa9.04□□□□□ -0.96
USP54-209ENST00000464635 GPR183P32249 361 aa9.04□□□□□ -0.96
USP54-209ENST00000464635 USF2Q15853 346 aaPredicted RBP9.04□□□□□ -0.96
USP54-209ENST00000464635 TOMM20LQ6UXN7 152 aa9.04□□□□□ -0.96
USP54-209ENST00000464635 CLEC19AQ6UXS0 136 aa9.04□□□□□ -0.96
USP54-209ENST00000464635 ZNF414Q96IQ9 312 aa9.04□□□□□ -0.96
USP54-209ENST00000464635 SMCO4Q9NRQ5 59 aa9.04□□□□□ -0.96
USP54-209ENST00000464635 TRBV6-1A0A0K0K1D8 114 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms