RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SLC25A6P12236 298 aa11.38□□□□□ -0.59
COL7A1-204ENST00000462475 ORM2P19652 201 aa11.38□□□□□ -0.59
COL7A1-204ENST00000462475 FAUP35544 74 aaKnown RBP11.38□□□□□ -0.59
COL7A1-204ENST00000462475 CNN1P51911 297 aaKnown RBP11.38□□□□□ -0.59
COL7A1-204ENST00000462475 RNF212Q495C1 297 aa11.38□□□□□ -0.59
COL7A1-204ENST00000462475 GGNBP1Q5YKI7 109 aa11.38□□□□□ -0.59
COL7A1-204ENST00000462475 MCFD2Q8NI22 146 aa11.38□□□□□ -0.59
COL7A1-204ENST00000462475 TMEM208Q9BTX3 173 aa11.38□□□□□ -0.59
COL7A1-204ENST00000462475 TRAV8-2A0A0B4J237 113 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 M0R2Z0 102 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 CRXO43186 299 aaPredicted RBP11.37□□□□□ -0.59
COL7A1-204ENST00000462475 SYNGR2O43760 224 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 PPP1R1AQ13522 171 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 SPINK13Q1W4C9 94 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 ACOT7LQ6ZUV0 252 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 ZNF575Q86XF7 245 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 RNF182Q8N6D2 247 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 BPIFCQ8NFQ6 507 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 OR11H7Q8NGC8 314 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 OR1B1Q8NGR6 318 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 CIB3Q96Q77 187 aaPredicted RBP11.37□□□□□ -0.59
COL7A1-204ENST00000462475 TMEM147Q9BVK8 224 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 TMED3Q9Y3Q3 217 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 HSPG2P98160 4391 aa11.37□□□□□ -0.59
COL7A1-204ENST00000462475 LRP1BQ9NZR2 4599 aa11.36□□□□□ -0.59
COL7A1-204ENST00000462475 ZNF705GA8MUZ8 300 aaPredicted RBP11.36□□□□□ -0.59
COL7A1-204ENST00000462475 INSP01308 110 aa11.36□□□□□ -0.59
COL7A1-204ENST00000462475 HOXB5P09067 269 aa11.36□□□□□ -0.59
COL7A1-204ENST00000462475 RPP30P78346 268 aaKnown RBP11.36□□□□□ -0.59
COL7A1-204ENST00000462475 AKR1C1Q04828 323 aa11.36□□□□□ -0.59
COL7A1-204ENST00000462475 PYDC2Q56P42 97 aa11.36□□□□□ -0.59
COL7A1-204ENST00000462475 SPANXN5Q5MJ07 72 aa11.36□□□□□ -0.59
COL7A1-204ENST00000462475 BAP18Q8IXM2 172 aa11.36□□□□□ -0.59
COL7A1-204ENST00000462475 TOMM5Q8N4H5 51 aa11.36□□□□□ -0.59
COL7A1-204ENST00000462475 OR4D5Q8NGN0 318 aa11.36□□□□□ -0.59
COL7A1-204ENST00000462475 V9GYH0 126 aa11.36□□□□□ -0.59
COL7A1-204ENST00000462475 H3BRN7 92 aa11.35□□□□□ -0.59
COL7A1-204ENST00000462475 SFT2D2O95562 160 aa11.35□□□□□ -0.59
COL7A1-204ENST00000462475 AP3S2P59780 193 aa11.35□□□□□ -0.59
COL7A1-204ENST00000462475 FGL1Q08830 312 aa11.35□□□□□ -0.59
COL7A1-204ENST00000462475 SOHLH1Q5JUK2 328 aa11.35□□□□□ -0.59
COL7A1-204ENST00000462475 GPR82Q96P67 336 aa11.35□□□□□ -0.59
COL7A1-204ENST00000462475 NACAE9PAV3 2078 aa11.34□□□□□ -0.59
COL7A1-204ENST00000462475 DUSP14O95147 198 aaKnown RBP11.34□□□□□ -0.59
COL7A1-204ENST00000462475 C1orf134Q5TEV5 83 aa11.34□□□□□ -0.59
COL7A1-204ENST00000462475 C15orf53Q8NAA6 179 aa11.34□□□□□ -0.59
COL7A1-204ENST00000462475 S100ZQ8WXG8 99 aa11.34□□□□□ -0.59
COL7A1-204ENST00000462475 SLC25A21Q9BQT8 299 aaPredicted RBP11.34□□□□□ -0.59
COL7A1-204ENST00000462475 SLC25A39Q9BZJ4 359 aaPredicted RBP11.34□□□□□ -0.59
COL7A1-204ENST00000462475 STRAPQ9Y3F4 350 aaKnown RBP11.34□□□□□ -0.59
COL7A1-204ENST00000462475 TRAV12-2A0A075B6T6 113 aa11.33□□□□□ -0.6
COL7A1-204ENST00000462475 PLAC8L1A1L4L8 177 aa11.33□□□□□ -0.6
COL7A1-204ENST00000462475 SMCO3A2RU48 225 aa11.33□□□□□ -0.6
COL7A1-204ENST00000462475 LYRM9A8MSI8 78 aa11.33□□□□□ -0.6
COL7A1-204ENST00000462475 CYP2G1PQ6ZSU1 146 aa11.33□□□□□ -0.6
COL7A1-204ENST00000462475 TMEM144Q7Z5S9 345 aa11.33□□□□□ -0.6
COL7A1-204ENST00000462475 ZNF738Q8NE65 137 aa11.33□□□□□ -0.6
COL7A1-204ENST00000462475 SHANK2-AS3Q9BTD1 123 aa11.33□□□□□ -0.6
COL7A1-204ENST00000462475 BOLA2-SMG1P6H3BVE0 249 aa11.32□□□□□ -0.6
COL7A1-204ENST00000462475 ADAP1O75689 374 aa11.32□□□□□ -0.6
COL7A1-204ENST00000462475 DEFB130BP0DP73 79 aa11.32□□□□□ -0.6
COL7A1-204ENST00000462475 DEFB130AP0DP74 79 aa11.32□□□□□ -0.6
COL7A1-204ENST00000462475 PRB4P10163 310 aaPredicted RBP11.32□□□□□ -0.6
COL7A1-204ENST00000462475 AZU1P20160 251 aa11.32□□□□□ -0.6
COL7A1-204ENST00000462475 TSPOP30536 169 aa11.32□□□□□ -0.6
COL7A1-204ENST00000462475 S100A5P33763 92 aa11.32□□□□□ -0.6
COL7A1-204ENST00000462475 POLR2GP62487 172 aaKnown RBP eCLIP11.32□□□□□ -0.6
COL7A1-204ENST00000462475 ZNF846Q147U1 533 aa11.32□□□□□ -0.6
COL7A1-204ENST00000462475 ATG101Q9BSB4 218 aa11.32□□□□□ -0.6
COL7A1-204ENST00000462475 HIGD1AQ9Y241 93 aa11.32□□□□□ -0.6
COL7A1-204ENST00000462475 IL5P05113 134 aa11.31□□□□□ -0.6
COL7A1-204ENST00000462475 S100A7P31151 101 aa11.31□□□□□ -0.6
COL7A1-204ENST00000462475 RAP2BP61225 183 aa11.31□□□□□ -0.6
COL7A1-204ENST00000462475 HIST1H1AQ02539 215 aaPredicted RBP11.31□□□□□ -0.6
COL7A1-204ENST00000462475 FCN2Q15485 313 aa11.31□□□□□ -0.6
COL7A1-204ENST00000462475 UHRF2Q96PU4 802 aa11.31□□□□□ -0.6
COL7A1-204ENST00000462475 KRTAP4-5Q9BYR2 181 aa11.31□□□□□ -0.6
COL7A1-204ENST00000462475 MUC4Q99102 2169 aa11.3□□□□□ -0.6
COL7A1-204ENST00000462475 PMS2P5A8MQ11 134 aa11.3□□□□□ -0.6
COL7A1-204ENST00000462475 F5H768 121 aa11.3□□□□□ -0.6
COL7A1-204ENST00000462475 HYPMO75409 117 aa11.3□□□□□ -0.6
COL7A1-204ENST00000462475 CCNKO75909 580 aa11.3□□□□□ -0.6
COL7A1-204ENST00000462475 LINC00869P0C866 280 aa11.3□□□□□ -0.6
COL7A1-204ENST00000462475 RPL7P18124 248 aaKnown RBP11.3□□□□□ -0.6
COL7A1-204ENST00000462475 CXCL3P19876 107 aa11.3□□□□□ -0.6
COL7A1-204ENST00000462475 FAM3BP58499 235 aaPredicted RBP11.3□□□□□ -0.6
COL7A1-204ENST00000462475 B2MP61769 119 aa11.3□□□□□ -0.6
COL7A1-204ENST00000462475 ID3Q02535 119 aa11.3□□□□□ -0.6
COL7A1-204ENST00000462475 OR8A1Q8NGG7 326 aa11.3□□□□□ -0.6
COL7A1-204ENST00000462475 A0A087X0K7 114 aa11.29□□□□□ -0.6
COL7A1-204ENST00000462475 SSSCA1O60232 199 aa11.29□□□□□ -0.6
COL7A1-204ENST00000462475 NUDT3O95989 172 aa11.29□□□□□ -0.6
COL7A1-204ENST00000462475 OR5G3P0C626 314 aa11.29□□□□□ -0.6
COL7A1-204ENST00000462475 PLP1P60201 277 aa11.29□□□□□ -0.6
COL7A1-204ENST00000462475 RHOBP62745 196 aa11.29□□□□□ -0.6
COL7A1-204ENST00000462475 TNP2Q05952 138 aa11.29□□□□□ -0.6
COL7A1-204ENST00000462475 ZNRF2Q8NHG8 242 aa11.29□□□□□ -0.6
COL7A1-204ENST00000462475 DEDD2Q8WXF8 326 aa11.29□□□□□ -0.6
COL7A1-204ENST00000462475 LINC01587Q99440 93 aa11.29□□□□□ -0.6
COL7A1-204ENST00000462475 PSENENQ9NZ42 101 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms