RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 GSG1LQ6UXU4 331 aa10.04□□□□□ -0.8
USP4-206ENST00000461553 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.04□□□□□ -0.8
USP4-206ENST00000461553 TMEM182Q6ZP80 229 aaPredicted RBP10.04□□□□□ -0.8
USP4-206ENST00000461553 ZNF767PQ75MW2 155 aa10.04□□□□□ -0.8
USP4-206ENST00000461553 S100A7AQ86SG5 101 aa10.04□□□□□ -0.8
USP4-206ENST00000461553 ZBTB8BQ8NAP8 495 aaPredicted RBP10.04□□□□□ -0.8
USP4-206ENST00000461553 OR10P1Q8NGE3 313 aa10.04□□□□□ -0.8
USP4-206ENST00000461553 MITD1Q8WV92 249 aa10.04□□□□□ -0.8
USP4-206ENST00000461553 RNF126Q9BV68 326 aa10.04□□□□□ -0.8
USP4-206ENST00000461553 SLC25A39Q9BZJ4 359 aaPredicted RBP10.04□□□□□ -0.8
USP4-206ENST00000461553 SLC35B3Q9H1N7 401 aa10.04□□□□□ -0.8
USP4-206ENST00000461553 RCL1Q9Y2P8 373 aaKnown RBP10.04□□□□□ -0.8
USP4-206ENST00000461553 RFNGQ9Y644 331 aa10.04□□□□□ -0.8
USP4-206ENST00000461553 HECTD4Q9Y4D8 3996 aa10.04□□□□□ -0.8
USP4-206ENST00000461553 DEFB131BA0A096LNP1 70 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 TEX48A0A1B0GUV7 120 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 PMS2P5A8MQ11 134 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 FNDC10F2Z333 226 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 LYRM1O43325 122 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 HYPMO75409 117 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 CCNKO75909 580 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 OR5G3P0C626 314 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 RPL7P18124 248 aaKnown RBP10.03□□□□□ -0.8
USP4-206ENST00000461553 EMP1P54849 157 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 FGL1Q08830 312 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 ZNF846Q147U1 533 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 C12orf74Q32Q52 190 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 C20orf173Q96LM9 149 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 SHANK2-AS3Q9BTD1 123 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 NDUFA13Q9P0J0 144 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 GSKIPQ9P0R6 139 aa10.03□□□□□ -0.8
USP4-206ENST00000461553 HBE1P02100 147 aa10.02□□□□□ -0.81
USP4-206ENST00000461553 SPART-AS1P0CW21 52 aa10.02□□□□□ -0.81
USP4-206ENST00000461553 TAS2R30P59541 319 aa10.02□□□□□ -0.81
USP4-206ENST00000461553 SLC38A11Q08AI6 406 aa10.02□□□□□ -0.81
USP4-206ENST00000461553 TEPPQ6URK8 271 aa10.02□□□□□ -0.81
USP4-206ENST00000461553 RNF24Q9Y225 148 aa10.02□□□□□ -0.81
USP4-206ENST00000461553 L7N2F9 121 aa10.01□□□□□ -0.81
USP4-206ENST00000461553 CCSO14618 274 aa10.01□□□□□ -0.81
USP4-206ENST00000461553 DUSP14O95147 198 aaKnown RBP10.01□□□□□ -0.81
USP4-206ENST00000461553 PLP1P60201 277 aa10.01□□□□□ -0.81
USP4-206ENST00000461553 VAMP2P63027 116 aa10.01□□□□□ -0.81
USP4-206ENST00000461553 ZNF546Q86UE3 836 aa10.01□□□□□ -0.81
USP4-206ENST00000461553 ZNF738Q8NE65 137 aa10.01□□□□□ -0.81
USP4-206ENST00000461553 UHRF2Q96PU4 802 aa10.01□□□□□ -0.81
USP4-206ENST00000461553 TMEM208Q9BTX3 173 aa10.01□□□□□ -0.81
USP4-206ENST00000461553 NPVFQ9HCQ7 196 aa10.01□□□□□ -0.81
USP4-206ENST00000461553 TRAV6A0A075B6T7 132 aa10□□□□□ -0.81
USP4-206ENST00000461553 FAM25EA8MYX2 175 aa10□□□□□ -0.81
USP4-206ENST00000461553 K7EPK0 472 aa10□□□□□ -0.81
USP4-206ENST00000461553 INSP01308 110 aa10□□□□□ -0.81
USP4-206ENST00000461553 TCRBP04435 133 aa10□□□□□ -0.81
USP4-206ENST00000461553 CNN1P51911 297 aaKnown RBP10□□□□□ -0.81
USP4-206ENST00000461553 PRR20EP86478 221 aa10□□□□□ -0.81
USP4-206ENST00000461553 PRR20CP86479 221 aa10□□□□□ -0.81
USP4-206ENST00000461553 PRR20DP86480 221 aa10□□□□□ -0.81
USP4-206ENST00000461553 PRR20BP86481 221 aa10□□□□□ -0.81
USP4-206ENST00000461553 PRR20AP86496 221 aa10□□□□□ -0.81
USP4-206ENST00000461553 RNF182Q8N6D2 247 aa10□□□□□ -0.81
USP4-206ENST00000461553 C17orf77Q96MU5 243 aa10□□□□□ -0.81
USP4-206ENST00000461553 NDUFAF3Q9BU61 184 aa10□□□□□ -0.81
USP4-206ENST00000461553 CCDC32Q9BV29 185 aa10□□□□□ -0.81
USP4-206ENST00000461553 ARL6Q9H0F7 186 aa10□□□□□ -0.81
USP4-206ENST00000461553 NUDT15Q9NV35 164 aa10□□□□□ -0.81
USP4-206ENST00000461553 LSM5Q9Y4Y9 91 aaKnown RBP10□□□□□ -0.81
USP4-206ENST00000461553 A0A087X0K7 114 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 TRAV8-2A0A0B4J237 113 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 LOC102723971A0A1B0GUV8 181 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 C7orf66A4D0T2 115 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 A8MTW9 85 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 PLA2G10O15496 165 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 MBPP02686 304 aaPredicted RBP9.99□□□□□ -0.81
USP4-206ENST00000461553 RRN3P1Q2M238 152 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 PXDC1Q5TGL8 231 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 FAM222AQ5U5X8 452 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 IGFL4Q6B9Z1 124 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 OR11H7Q8NGC8 314 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 IGF2BP2-AS1Q96M15 143 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 GGACTQ9BVM4 153 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 ARV1Q9H2C2 271 aa9.99□□□□□ -0.81
USP4-206ENST00000461553 C5orf51A6NDU8 294 aa9.98□□□□□ -0.81
USP4-206ENST00000461553 GOSR2O14653 212 aa9.98□□□□□ -0.81
USP4-206ENST00000461553 BCAP31P51572 246 aa9.98□□□□□ -0.81
USP4-206ENST00000461553 SPINK13Q1W4C9 94 aa9.98□□□□□ -0.81
USP4-206ENST00000461553 AMTNQ6UX39 209 aa9.98□□□□□ -0.81
USP4-206ENST00000461553 C1orf158Q8N1D5 194 aa9.98□□□□□ -0.81
USP4-206ENST00000461553 LRRC20Q8TCA0 184 aa9.98□□□□□ -0.81
USP4-206ENST00000461553 ZNF431Q8TF32 576 aaPredicted RBP9.98□□□□□ -0.81
USP4-206ENST00000461553 NIPSNAP3BQ9BS92 247 aa9.98□□□□□ -0.81
USP4-206ENST00000461553 DKK2Q9UBU2 259 aa9.98□□□□□ -0.81
USP4-206ENST00000461553 YTHDF2Q9Y5A9 579 aaKnown RBP9.98□□□□□ -0.81
USP4-206ENST00000461553 DNAH2Q9P225 4427 aa9.97□□□□□ -0.81
USP4-206ENST00000461553 BOLA2-SMG1P6H3BVE0 249 aa9.97□□□□□ -0.81
USP4-206ENST00000461553 M0R2Z0 102 aa9.97□□□□□ -0.81
USP4-206ENST00000461553 AGPAT2O15120 278 aa9.97□□□□□ -0.81
USP4-206ENST00000461553 COX7A2P2O60397 106 aa9.97□□□□□ -0.81
USP4-206ENST00000461553 P0DMU3 169 aa9.97□□□□□ -0.81
USP4-206ENST00000461553 FAM231AP0DMU4 169 aa9.97□□□□□ -0.81
USP4-206ENST00000461553 FAM231CP0DMU5 169 aa9.97□□□□□ -0.81
USP4-206ENST00000461553 CXCL2P19875 107 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms