RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 IFNA10P01566 189 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 IL4P05112 153 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 RD3LP0DJH9 198 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 C4BPBP20851 252 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 NUP62P37198 522 aaPredicted RBP5.23□□□□□ -1.57
USP54-208ENST00000461520 CCR6P51684 374 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 TMBIM6P55061 237 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 ATP5IP56385 69 aaPredicted RBP5.23□□□□□ -1.57
USP54-208ENST00000461520 NUTF2P61970 127 aaKnown RBP5.23□□□□□ -1.57
USP54-208ENST00000461520 SNRPD3P62318 126 aaKnown RBP5.23□□□□□ -1.57
USP54-208ENST00000461520 DHRS2Q13268 280 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 USF2Q15853 346 aaPredicted RBP5.23□□□□□ -1.57
USP54-208ENST00000461520 PSMG4Q5JS54 123 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 ACTL10Q5JWF8 245 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 SIGLEC15Q6ZMC9 328 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 CLVS1Q8IUQ0 354 aaPredicted RBP5.23□□□□□ -1.57
USP54-208ENST00000461520 CENPSQ8N2Z9 138 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 CSNK1G2-AS1Q8NCQ2 148 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 DYNC2LI1Q8TCX1 351 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 TMEM170AQ8WVE7 144 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 RAB40CQ96S21 281 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 NRN1Q9NPD7 142 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 CCDC59Q9P031 241 aaKnown RBP5.23□□□□□ -1.57
USP54-208ENST00000461520 HSPB7Q9UBY9 170 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 RSL24D1Q9UHA3 163 aaKnown RBP5.23□□□□□ -1.57
USP54-208ENST00000461520 SHPKQ9UHJ6 478 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 IGLV5-52A0A0A0MRZ9 124 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 IGLL5B9A064 214 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 FAM90A26D6RGX4 464 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 RBMY1A1P0DJD3 496 aaKnown RBP5.22□□□□□ -1.57
USP54-208ENST00000461520 RBMY1CP0DJD4 496 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 ANXA3P12429 323 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 SRPXP78539 464 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 SMCO1Q147U7 214 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 RBMY1FQ15415 496 aaKnown RBP5.22□□□□□ -1.57
USP54-208ENST00000461520 OR8G2PQ6IF36 304 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 LGI3Q8N145 548 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 OR51G1Q8NGK1 321 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 DTD1Q8TEA8 209 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 TMEM18Q96B42 140 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 RNF125Q96EQ8 232 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 ACY3Q96HD9 319 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 MCUBQ9NWR8 336 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 TBC1D24Q9ULP9 559 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 APLNQ9ULZ1 77 aa5.22□□□□□ -1.57
USP54-208ENST00000461520 TRAV10A0A0B4J240 114 aa5.21□□□□□ -1.58
USP54-208ENST00000461520 DUXBA0A1W2PPF3 345 aa5.21□□□□□ -1.58
USP54-208ENST00000461520 FABP12A6NFH5 140 aa5.21□□□□□ -1.58
USP54-208ENST00000461520 H3BMM0 161 aa5.21□□□□□ -1.58
USP54-208ENST00000461520 AKR1C4P17516 323 aa5.21□□□□□ -1.58
USP54-208ENST00000461520 HLA-DMBP28068 263 aa5.21□□□□□ -1.58
USP54-208ENST00000461520 GPX4P36969 197 aaPredicted RBP5.21□□□□□ -1.58
USP54-208ENST00000461520 NKX2-1P43699 371 aaPredicted RBP5.21□□□□□ -1.58
USP54-208ENST00000461520 SUPT4H1P63272 117 aaKnown RBP5.21□□□□□ -1.58
USP54-208ENST00000461520 LYZL2Q7Z4W2 148 aa5.21□□□□□ -1.58
USP54-208ENST00000461520 SOSTQ9BQB4 213 aa5.21□□□□□ -1.58
USP54-208ENST00000461520 SLIRPQ9GZT3 109 aaKnown RBP5.21□□□□□ -1.58
USP54-208ENST00000461520 RBKSQ9H477 322 aa5.21□□□□□ -1.58
USP54-208ENST00000461520 CLEC5AQ9NY25 188 aa5.21□□□□□ -1.58
USP54-208ENST00000461520 DNAH6Q9C0G6 4158 aa5.21□□□□□ -1.58
USP54-208ENST00000461520 IGHV4-4A0A075B6R2 117 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 ZFP92A6NM28 416 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 SNRPGP15A8MWD9 76 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 NOL3O60936 208 aaKnown RBP5.2□□□□□ -1.58
USP54-208ENST00000461520 PITX3O75364 302 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 FABP1P07148 127 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 HLA-DRB4P13762 266 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 FAUP35544 74 aaKnown RBP5.2□□□□□ -1.58
USP54-208ENST00000461520 RAB11AP62491 216 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 GAMTQ14353 236 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 TMEM128Q5BJH2 165 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 C1orf194Q5T5A4 169 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 OR1S1Q8NH92 325 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 SVIPQ8NHG7 77 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 DEDD2Q8WXF8 326 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 SLC35E1Q96K37 410 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 PBDC1Q9BVG4 233 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 HLA-DRB4X5D2U9 266 aa5.2□□□□□ -1.58
USP54-208ENST00000461520 IGKV1D-37A0A075B6S9 117 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 H3BMQ9 156 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 CFDP00746 253 aaPredicted RBP5.19□□□□□ -1.58
USP54-208ENST00000461520 SLC25A6P12236 298 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 ID1P41134 155 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 PSMB3P49720 205 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 AP3S2P59780 193 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 ZNF90Q03938 601 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 C12orf74Q32Q52 190 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 SAMD13Q5VXD3 122 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 ZNF705AQ6ZN79 300 aaPredicted RBP5.19□□□□□ -1.58
USP54-208ENST00000461520 FOXI2Q6ZQN5 318 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 TOMM5Q8N4H5 51 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 LRTM2Q8N967 370 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 MCFD2Q8NI22 146 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 RNF126Q9BV68 326 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 SAV1Q9H4B6 383 aaPredicted RBP5.19□□□□□ -1.58
USP54-208ENST00000461520 XCL2Q9UBD3 114 aa5.19□□□□□ -1.58
USP54-208ENST00000461520 FAT2Q9NYQ8 4349 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 DNAH2Q9P225 4427 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 DEFB131BA0A096LNP1 70 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 TMEM189A5PLL7 270 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms