RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 ZNF586Q9NXT0 402 aa11.01□□□□□ -0.65
USP39-207ENST00000450066 ANK3Q12955 4377 aaKnown RBP11.01□□□□□ -0.65
USP39-207ENST00000450066 MRPS12O15235 138 aaKnown RBP11□□□□□ -0.65
USP39-207ENST00000450066 RPL23P62829 140 aaKnown RBP11□□□□□ -0.65
USP39-207ENST00000450066 TEX38Q6PEX7 206 aa11□□□□□ -0.65
USP39-207ENST00000450066 LCNL1Q6ZST4 164 aa11□□□□□ -0.65
USP39-207ENST00000450066 OR4X2Q8NGF9 303 aa11□□□□□ -0.65
USP39-207ENST00000450066 DNAJC9-AS1A6NH13 148 aa11□□□□□ -0.65
USP39-207ENST00000450066 IGHV3-11P01762 117 aa11□□□□□ -0.65
USP39-207ENST00000450066 ADIRFQ15847 76 aa11□□□□□ -0.65
USP39-207ENST00000450066 FAM209BQ5JX69 171 aa11□□□□□ -0.65
USP39-207ENST00000450066 C2CD4CQ8TF44 421 aa11□□□□□ -0.65
USP39-207ENST00000450066 TRBV20OR9-2A0A075B6H5 130 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 TRBV19A0A075B6N1 114 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 IGHV3OR16-8A0A075B7F1 116 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 CLPSL1A2RUU4 121 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 TRBV12-3P01733 135 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 RPL7P18124 248 aaKnown RBP10.99□□□□□ -0.65
USP39-207ENST00000450066 RPL35P42766 123 aaKnown RBP10.99□□□□□ -0.65
USP39-207ENST00000450066 FOXE3Q13461 319 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 TMEM190Q8WZ59 177 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 TUBA4BQ9H853 241 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 HELTA6NFD8 242 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 C9JCJ5 164 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 ELANEP08246 267 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 LINC01551Q86U37 167 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 HIST1H2BAQ96A08 127 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 Q9H3A6 140 aa10.99□□□□□ -0.65
USP39-207ENST00000450066 PGPA6NDG6 321 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 H3BTX0 84 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 CLDN34H7C241 214 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 NDUFA4O00483 81 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 TSPAN4O14817 238 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 C10orf99Q6UWK7 81 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 OR8I2Q8N0Y5 310 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 LYPD1Q8N2G4 141 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 METTL26Q96S19 204 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 OTORQ9NRC9 128 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 SERTAD4Q9NUC0 356 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 TMEM242Q9NWH2 141 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 PRELID1Q9Y255 219 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 NF1P21359 2839 aa10.98□□□□□ -0.65
USP39-207ENST00000450066 PEX7O00628 323 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 BUB3O43684 328 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 PDE6HQ13956 83 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 RNF152Q8N8N0 203 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 C5orf17Q8NAS9 161 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 SMR3AQ99954 134 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 ESM1Q9NQ30 184 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 EPDR1Q9UM22 224 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 LY96Q9Y6Y9 160 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 FAM181BA6NEQ2 426 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 SLC25A5P05141 298 aaKnown RBP10.97□□□□□ -0.65
USP39-207ENST00000450066 RPL15P61313 204 aaKnown RBP10.97□□□□□ -0.65
USP39-207ENST00000450066 C1orf194Q5T5A4 169 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 MYOZ3Q8TDC0 251 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 PEF1Q9UBV8 284 aaKnown RBP10.97□□□□□ -0.65
USP39-207ENST00000450066 MTORP42345 2549 aa10.97□□□□□ -0.65
USP39-207ENST00000450066 CXorf65A6NEN9 183 aa10.96□□□□□ -0.65
USP39-207ENST00000450066 GGCTO75223 188 aaKnown RBP10.96□□□□□ -0.65
USP39-207ENST00000450066 MT-ND4LP03901 98 aa10.96□□□□□ -0.65
USP39-207ENST00000450066 RNF212Q495C1 297 aa10.96□□□□□ -0.65
USP39-207ENST00000450066 C17orf77Q96MU5 243 aa10.96□□□□□ -0.65
USP39-207ENST00000450066 GPR82Q96P67 336 aa10.96□□□□□ -0.65
USP39-207ENST00000450066 CTDSP1Q9GZU7 261 aa10.96□□□□□ -0.65
USP39-207ENST00000450066 U3KQE9 123 aa10.96□□□□□ -0.65
USP39-207ENST00000450066 CUBNO60494 3623 aa10.96□□□□□ -0.66
USP39-207ENST00000450066 PGPEP1LA6NFU8 196 aa10.96□□□□□ -0.66
USP39-207ENST00000450066 LY6G6DO95868 133 aa10.96□□□□□ -0.66
USP39-207ENST00000450066 RPLP1P05386 114 aaKnown RBP10.96□□□□□ -0.66
USP39-207ENST00000450066 SRD5A1P18405 259 aa10.96□□□□□ -0.66
USP39-207ENST00000450066 GNG4P50150 75 aa10.96□□□□□ -0.66
USP39-207ENST00000450066 CNN1P51911 297 aaKnown RBP10.96□□□□□ -0.66
USP39-207ENST00000450066 TAS2R60P59551 318 aa10.96□□□□□ -0.66
USP39-207ENST00000450066 SIGLEC15Q6ZMC9 328 aa10.96□□□□□ -0.66
USP39-207ENST00000450066 C15orf54Q8N8G6 183 aa10.96□□□□□ -0.66
USP39-207ENST00000450066 OCC1Q8TAD7 63 aa10.96□□□□□ -0.66
USP39-207ENST00000450066 CDC42EP3Q9UKI2 254 aa10.96□□□□□ -0.66
USP39-207ENST00000450066 CENPWQ5EE01 88 aa10.95□□□□□ -0.66
USP39-207ENST00000450066 ISOC2Q96AB3 205 aa10.95□□□□□ -0.66
USP39-207ENST00000450066 ATG101Q9BSB4 218 aa10.95□□□□□ -0.66
USP39-207ENST00000450066 HIVEP2P31629 2446 aa10.95□□□□□ -0.66
USP39-207ENST00000450066 SLC17A3O00476 420 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 CD99P14209 185 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 GNG5P63218 68 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 UNQ9165/PRO28630Q6UXU0 137 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 EXOC3-AS1Q8N2X6 119 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 UBE2E2Q96LR5 201 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 IGF2BP2-AS1Q96M15 143 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 LINC00479Q96M42 142 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 KLF12Q9Y4X4 402 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 SMAD5-AS1Q9Y6J3 95 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 COLCA2A8K830 154 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 ZNF207O43670 478 aaKnown RBP10.94□□□□□ -0.66
USP39-207ENST00000450066 APOHP02749 345 aaPredicted RBP10.94□□□□□ -0.66
USP39-207ENST00000450066 TCRAP04437 139 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 ATF4P18848 351 aaPredicted RBP10.94□□□□□ -0.66
USP39-207ENST00000450066 PSG9Q00887 426 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 Q6ZSV7 163 aa10.94□□□□□ -0.66
USP39-207ENST00000450066 CMTM2Q8TAZ6 248 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms