RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 PPP1R14DQ9NXH3 145 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 Q9UFV3 132 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 LY6HO94772 140 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 GUSBP1Q15486 140 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 TEX45Q8NA69 505 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 OR4A5Q8NH83 315 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 TMEM189A5PLL7 270 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 NMUP48645 174 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 FOXC1Q12948 553 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 C8orf46Q8TAG6 207 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 CGB1A6NKQ9 187 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 CR1LQ2VPA4 569 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 GDF5OSQ5U4N7 250 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 TMEM116Q8NCL8 245 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 TIMD4Q96H15 378 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 HIF1ANQ9NWT6 349 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 TWIST1Q15672 202 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 RAB37Q96AX2 223 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 SLC25A39Q9BZJ4 359 aaPredicted RBP9.53□□□□□ -0.88
MSH6-204ENST00000445503 CEP295Q9C0D2 2601 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 SCGB2A2Q13296 93 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.53□□□□□ -0.884e-7■■□□□ 11.5
MSH6-204ENST00000445503 A0A087X0K7 114 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 J3KRW8 73 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 C18orf15Q96N68 181 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 PRO3102Q9H379 93 aa9.53□□□□□ -0.88
MSH6-204ENST00000445503 IGHV2-26A0A0B4J1V2 119 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 C22orf46C9J442 243 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 SYS1-DBNDD2H3BUS1 97 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 FCER1GP30273 86 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 FBLN7Q53RD9 439 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 SIGLEC9Q9Y336 463 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 ESDP10768 282 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 CKS2P33552 79 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 OTORQ9NRC9 128 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 PRSS1P07477 247 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 ARMS2P0C7Q2 107 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 ATP5L2Q7Z4Y8 100 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 NAA38Q9BRA0 125 aaKnown RBP9.52□□□□□ -0.89
MSH6-204ENST00000445503 CTSZQ9UBR2 303 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 PSG8Q9UQ74 426 aa9.52□□□□□ -0.89
MSH6-204ENST00000445503 F11RQ9Y624 299 aaKnown RBP9.52□□□□□ -0.89
MSH6-204ENST00000445503 TIMM23O14925 209 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 LOXP28300 417 aaPredicted RBP9.51□□□□□ -0.89
MSH6-204ENST00000445503 IGFL4Q6B9Z1 124 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 C16orf54Q6UWD8 224 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 C12orf54Q6X4T0 127 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 OR10AG1Q8NH19 301 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 C17orf77Q96MU5 243 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 TRGV9Q99603 122 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 SPG11Q96JI7 2443 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 IGHV3-49A0A0A0MS15 119 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 IGHV1-3A0A0C4DH29 117 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 IGHV3-66A0A0C4DH42 116 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 TM4SF20Q53R12 229 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 RASL11AQ6T310 242 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 Q6ZS92 163 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 NDFIP1Q9BT67 221 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 TOMM40O96008 361 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 LINC00322Q6ZN03 302 aaPredicted RBP9.51□□□□□ -0.89
MSH6-204ENST00000445503 FAM231DQ6ZW35 169 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 NCOR1P1Q9H4R4 102 aa9.51□□□□□ -0.89
MSH6-204ENST00000445503 IGHV1-24A0A0C4DH33 117 aa9.5□□□□□ -0.89
MSH6-204ENST00000445503 TEX36Q5VZQ5 186 aa9.5□□□□□ -0.89
MSH6-204ENST00000445503 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.5□□□□□ -0.89
MSH6-204ENST00000445503 OR2J3O76001 311 aa9.5□□□□□ -0.89
MSH6-204ENST00000445503 PAX1P15863 534 aa9.5□□□□□ -0.89
MSH6-204ENST00000445503 PPIFP30405 207 aaKnown RBP9.5□□□□□ -0.89
MSH6-204ENST00000445503 COMPP49747 757 aaPredicted RBP9.5□□□□□ -0.89
MSH6-204ENST00000445503 ECSCRQ19T08 205 aa9.5□□□□□ -0.89
MSH6-204ENST00000445503 IGLC7A0M8Q6 106 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 RPL11P62913 178 aaKnown RBP9.49□□□□□ -0.89
MSH6-204ENST00000445503 Q86TA4 180 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 RNF125Q96EQ8 232 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 COX11Q9Y6N1 276 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 A0A1B0GWJ7 208 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 PRR30Q53SZ7 412 aaPredicted RBP9.49□□□□□ -0.89
MSH6-204ENST00000445503 PRELID3AQ96N28 172 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 UFC1Q9Y3C8 167 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 IGKV1D-37A0A075B6S9 117 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 APOBEC3AP31941 199 aaPredicted RBP9.49□□□□□ -0.89
MSH6-204ENST00000445503 CEACAM3P40198 252 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 KLRD1Q13241 179 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 AMMECR1LQ6DCA0 310 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 IGFL2Q6UWQ7 119 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 ATRXP46100 2492 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 E7EQL1 145 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 MRPL52Q86TS9 123 aaKnown RBP9.49□□□□□ -0.89
MSH6-204ENST00000445503 NUP37Q8NFH4 326 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 GTSF1Q8WW33 167 aa9.49□□□□□ -0.89
MSH6-204ENST00000445503 IGKV2-40A0A087WW87 121 aaPredicted RBP9.48□□□□□ -0.89
MSH6-204ENST00000445503 NCR2O95944 276 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 IGKV2D-40P01614 121 aaPredicted RBP9.48□□□□□ -0.89
MSH6-204ENST00000445503 UBE2V1Q13404 147 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 TMEM155Q4W5P6 130 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 Q8TAT8 98 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 CHCHD1Q96BP2 118 aaKnown RBP9.48□□□□□ -0.89
MSH6-204ENST00000445503 MRPS16Q9Y3D3 137 aaKnown RBP9.48□□□□□ -0.89
MSH6-204ENST00000445503 SOX21Q9Y651 276 aaPredicted RBP9.48□□□□□ -0.89
MSH6-204ENST00000445503 ARHGAP32A7KAX9 2087 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms