RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 OXLD1Q5BKU9 147 aa11.91□□□□□ -0.5
USP40-206ENST00000443711 FAM90A2PQ658T7 463 aa11.91□□□□□ -0.5
USP40-206ENST00000443711 LEMD1Q68G75 181 aa11.91□□□□□ -0.5
USP40-206ENST00000443711 MRPL32Q9BYC8 188 aaKnown RBP11.91□□□□□ -0.5
USP40-206ENST00000443711 FUT9Q9Y231 359 aa11.91□□□□□ -0.5
USP40-206ENST00000443711 SELENOKQ9Y6D0 94 aa11.91□□□□□ -0.5
USP40-206ENST00000443711 RPL7P18124 248 aaKnown RBP11.9□□□□□ -0.5
USP40-206ENST00000443711 RPL11P62913 178 aaKnown RBP11.9□□□□□ -0.5
USP40-206ENST00000443711 LCN12Q6JVE5 192 aa11.9□□□□□ -0.5
USP40-206ENST00000443711 SIGLEC15Q6ZMC9 328 aa11.9□□□□□ -0.5
USP40-206ENST00000443711 TMEM61Q8N0U2 210 aa11.9□□□□□ -0.5
USP40-206ENST00000443711 SEPSECSQ9HD40 501 aaKnown RBP11.9□□□□□ -0.5
USP40-206ENST00000443711 ZMAT5Q9UDW3 170 aaKnown RBP11.9□□□□□ -0.5
USP40-206ENST00000443711 SORL1Q92673 2214 aa11.9□□□□□ -0.51
USP40-206ENST00000443711 UMAD1C9J7I0 102 aa11.89□□□□□ -0.51
USP40-206ENST00000443711 TSPAN4O14817 238 aa11.89□□□□□ -0.51
USP40-206ENST00000443711 GALR1P47211 349 aa11.89□□□□□ -0.51
USP40-206ENST00000443711 MORN5Q5VZ52 161 aa11.89□□□□□ -0.51
USP40-206ENST00000443711 SPATA31B1PQ5VZV4 182 aa11.89□□□□□ -0.51
USP40-206ENST00000443711 FAM122CQ6P4D5 195 aa11.89□□□□□ -0.51
USP40-206ENST00000443711 MIR17HGQ75NE6 70 aa11.89□□□□□ -0.51
USP40-206ENST00000443711 BPIFA4PQ86YQ2 179 aa11.89□□□□□ -0.51
USP40-206ENST00000443711 TMED6Q8WW62 240 aa11.89□□□□□ -0.51
USP40-206ENST00000443711 ACTR3CQ9C0K3 210 aaPredicted RBP11.89□□□□□ -0.51
USP40-206ENST00000443711 RPRMQ9NS64 109 aa11.89□□□□□ -0.51
USP40-206ENST00000443711 TRAV5A0A0B4J249 113 aa11.88□□□□□ -0.51
USP40-206ENST00000443711 TAS2R45P59539 299 aa11.88□□□□□ -0.51
USP40-206ENST00000443711 PAFAH1B2P68402 229 aa11.88□□□□□ -0.51
USP40-206ENST00000443711 SAMD5Q5TGI4 173 aa11.88□□□□□ -0.51
USP40-206ENST00000443711 RPP25LQ8N5L8 163 aaKnown RBP11.88□□□□□ -0.51
USP40-206ENST00000443711 IGKV3-7A0A075B6H7 116 aa11.87□□□□□ -0.51
USP40-206ENST00000443711 IZUMO1RA6ND01 250 aa11.87□□□□□ -0.51
USP40-206ENST00000443711 ZNF785A8K8V0 405 aa11.87□□□□□ -0.51
USP40-206ENST00000443711 G3V4G9 280 aa11.87□□□□□ -0.51
USP40-206ENST00000443711 CDC34P49427 236 aaPredicted RBP11.87□□□□□ -0.51
USP40-206ENST00000443711 GUCA2BQ16661 112 aa11.87□□□□□ -0.51
USP40-206ENST00000443711 SPAG8Q99932 426 aaPredicted RBP11.87□□□□□ -0.51
USP40-206ENST00000443711 MGAM2Q2M2H8 2515 aa11.87□□□□□ -0.51
USP40-206ENST00000443711 DNASE2O00115 360 aaPredicted RBP11.86□□□□□ -0.51
USP40-206ENST00000443711 ATF4P18848 351 aaPredicted RBP11.86□□□□□ -0.51
USP40-206ENST00000443711 KHDC3LQ587J8 217 aa11.86□□□□□ -0.51
USP40-206ENST00000443711 GBGT1Q8N5D6 347 aa11.86□□□□□ -0.51
USP40-206ENST00000443711 STXBP6Q8NFX7 210 aa11.86□□□□□ -0.51
USP40-206ENST00000443711 RAB24Q969Q5 203 aa11.86□□□□□ -0.51
USP40-206ENST00000443711 PHYHIPLQ96FC7 376 aa11.86□□□□□ -0.51
USP40-206ENST00000443711 FAM167A-AS1Q96KT0 104 aa11.86□□□□□ -0.51
USP40-206ENST00000443711 SLC25A2Q9BXI2 301 aa11.86□□□□□ -0.51
USP40-206ENST00000443711 MS4A6AQ9H2W1 248 aa11.86□□□□□ -0.51
USP40-206ENST00000443711 PLA2G2EQ9NZK7 142 aa11.86□□□□□ -0.51
USP40-206ENST00000443711 TMEM14CQ9P0S9 112 aa11.86□□□□□ -0.51
USP40-206ENST00000443711 SMAD5-AS1Q9Y6J3 95 aa11.86□□□□□ -0.51
USP40-206ENST00000443711 TRAV2A0A0B4J234 112 aa11.85□□□□□ -0.51
USP40-206ENST00000443711 OR4C46A6NHA9 309 aa11.85□□□□□ -0.51
USP40-206ENST00000443711 MRPS12O15235 138 aaKnown RBP11.85□□□□□ -0.51
USP40-206ENST00000443711 MEOX2P50222 304 aa11.85□□□□□ -0.51
USP40-206ENST00000443711 RAB5CP51148 216 aa11.85□□□□□ -0.51
USP40-206ENST00000443711 EGFEM1PQ0D2K5 195 aa11.85□□□□□ -0.51
USP40-206ENST00000443711 DPPA3Q6W0C5 159 aa11.85□□□□□ -0.51
USP40-206ENST00000443711 WFDC3Q8IUB2 231 aa11.85□□□□□ -0.51
USP40-206ENST00000443711 OR51M1Q9H341 326 aa11.85□□□□□ -0.51
USP40-206ENST00000443711 NRN1Q9NPD7 142 aa11.85□□□□□ -0.51
USP40-206ENST00000443711 A0A087X0K7 114 aa11.84□□□□□ -0.51
USP40-206ENST00000443711 CTXND1A0A1B0GTU2 59 aa11.84□□□□□ -0.51
USP40-206ENST00000443711 OR7C2O60412 319 aa11.84□□□□□ -0.51
USP40-206ENST00000443711 GP9P14770 177 aa11.84□□□□□ -0.51
USP40-206ENST00000443711 TFPI2P48307 235 aa11.84□□□□□ -0.51
USP40-206ENST00000443711 SULT1A2P50226 295 aa11.84□□□□□ -0.51
USP40-206ENST00000443711 PQLC2Q6ZP29 291 aa11.84□□□□□ -0.51
USP40-206ENST00000443711 PAXXQ9BUH6 204 aa11.84□□□□□ -0.51
USP40-206ENST00000443711 ZNF256Q9Y2P7 627 aaPredicted RBP11.84□□□□□ -0.51
USP40-206ENST00000443711 CMYA5Q8N3K9 4069 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 K7EQG2 157 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 STAG3L2P0CL84 134 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 STAG3L3P0CL85 134 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 PYYP10082 97 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 HIST1H1EP10412 219 aaKnown RBP11.83□□□□□ -0.52
USP40-206ENST00000443711 ZNF726P1Q15940 193 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 GUK1Q16774 197 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 BEAN1Q3B7T3 259 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 SAMD13Q5VXD3 122 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 ALKAL2Q6UX46 152 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 FAM213BQ8TBF2 198 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 RNF141Q8WVD5 230 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 HRH4Q9H3N8 390 aa11.83□□□□□ -0.52
USP40-206ENST00000443711 FBN3Q75N90 2809 aa11.82□□□□□ -0.52
USP40-206ENST00000443711 HMGB3O15347 200 aaKnown RBP11.82□□□□□ -0.52
USP40-206ENST00000443711 EIF3GO75821 320 aaKnown RBP eCLIP11.82□□□□□ -0.52
USP40-206ENST00000443711 IGLC2P0DOY2 106 aa11.82□□□□□ -0.52
USP40-206ENST00000443711 CMC4P56277 68 aaPredicted RBP11.82□□□□□ -0.52
USP40-206ENST00000443711 KRTAP10-11P60412 298 aa11.82□□□□□ -0.52
USP40-206ENST00000443711 KPRPQ5T749 579 aaPredicted RBP11.82□□□□□ -0.52
USP40-206ENST00000443711 LRRC20Q8TCA0 184 aa11.82□□□□□ -0.52
USP40-206ENST00000443711 DCANP1Q8TF63 244 aa11.82□□□□□ -0.52
USP40-206ENST00000443711 H3BQ15 152 aa11.81□□□□□ -0.52
USP40-206ENST00000443711 CXorf1O96002 111 aa11.81□□□□□ -0.52
USP40-206ENST00000443711 NBEAP1P0C6P0 100 aa11.81□□□□□ -0.52
USP40-206ENST00000443711 ARL14EPLP0DKL9 152 aa11.81□□□□□ -0.52
USP40-206ENST00000443711 ID1P41134 155 aa11.81□□□□□ -0.52
USP40-206ENST00000443711 FHITP49789 147 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms