RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 NAA38Q9BRA0 125 aaKnown RBP13.99□□□□□ -0.17
PTPRF-209ENST00000438120 CD5P06127 495 aa13.99□□□□□ -0.17
PTPRF-209ENST00000438120 ERCC8Q13216 396 aa13.99□□□□□ -0.17
PTPRF-209ENST00000438120 DTX2Q86UW9 622 aa13.99□□□□□ -0.17
PTPRF-209ENST00000438120 CHCHD1Q96BP2 118 aaKnown RBP13.99□□□□□ -0.17
PTPRF-209ENST00000438120 LINC01551Q86U37 167 aa13.98□□□□□ -0.17
PTPRF-209ENST00000438120 HIST1H2BLQ99880 126 aa13.98□□□□□ -0.17
PTPRF-209ENST00000438120 PLNP26678 52 aa13.98□□□□□ -0.17
PTPRF-209ENST00000438120 CKS1BP61024 79 aa13.98□□□□□ -0.17
PTPRF-209ENST00000438120 SPSB3Q6PJ21 355 aa13.98□□□□□ -0.17
PTPRF-209ENST00000438120 TP53BP1Q12888 1972 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-209ENST00000438120 S100A7L2Q5SY68 101 aa13.98□□□□□ -0.17
PTPRF-209ENST00000438120 RHPN1-AS1Q9BWJ2 59 aa13.98□□□□□ -0.17
PTPRF-209ENST00000438120 A0A087WWL8 130 aa13.98□□□□□ -0.17
PTPRF-209ENST00000438120 SMKR1H3BMG3 65 aa13.98□□□□□ -0.17
PTPRF-209ENST00000438120 IGHG3P01860 377 aa13.98□□□□□ -0.17
PTPRF-209ENST00000438120 QRFPP83859 136 aa13.98□□□□□ -0.17
PTPRF-209ENST00000438120 OVOL3O00110 214 aa13.97□□□□□ -0.17
PTPRF-209ENST00000438120 SYNJ2BPP57105 145 aa13.97□□□□□ -0.17
PTPRF-209ENST00000438120 PHLDA1Q8WV24 401 aaPredicted RBP13.97□□□□□ -0.17
PTPRF-209ENST00000438120 ROS1P08922 2347 aa13.97□□□□□ -0.17
PTPRF-209ENST00000438120 OOSP1A8MZH6 123 aa13.96□□□□□ -0.17
PTPRF-209ENST00000438120 C15orf62A8K5M9 175 aa13.96□□□□□ -0.17
PTPRF-209ENST00000438120 Q6ZRM9 215 aa13.96□□□□□ -0.17
PTPRF-209ENST00000438120 RNF5Q99942 180 aa13.96□□□□□ -0.17
PTPRF-209ENST00000438120 PSG3Q16557 428 aa13.96□□□□□ -0.17
PTPRF-209ENST00000438120 NUP35Q8NFH5 326 aa13.96□□□□□ -0.17
PTPRF-209ENST00000438120 RIF1Q5UIP0 2472 aaKnown RBP13.96□□□□□ -0.17
PTPRF-209ENST00000438120 SP5Q6BEB4 398 aaPredicted RBP13.96□□□□□ -0.17
PTPRF-209ENST00000438120 ANK1P16157 1881 aa13.96□□□□□ -0.18
PTPRF-209ENST00000438120 C9orf139Q6ZV77 190 aa13.96□□□□□ -0.18
PTPRF-209ENST00000438120 LINC01356Q8N9X3 169 aa13.96□□□□□ -0.18
PTPRF-209ENST00000438120 ORAOV1Q8WV07 137 aa13.96□□□□□ -0.18
PTPRF-209ENST00000438120 CST9LQ9H4G1 147 aa13.96□□□□□ -0.18
PTPRF-209ENST00000438120 DEFB130BP0DP73 79 aa13.95□□□□□ -0.18
PTPRF-209ENST00000438120 DEFB130AP0DP74 79 aa13.95□□□□□ -0.18
PTPRF-209ENST00000438120 RPL36AP83881 106 aaKnown RBP13.95□□□□□ -0.18
PTPRF-209ENST00000438120 TMEM86BQ8N661 226 aa13.95□□□□□ -0.18
PTPRF-209ENST00000438120 RPL36ALQ969Q0 106 aaKnown RBP13.95□□□□□ -0.18
PTPRF-209ENST00000438120 C1orf159Q96HA4 380 aa13.95□□□□□ -0.18
PTPRF-209ENST00000438120 LINC00479Q96M42 142 aa13.95□□□□□ -0.18
PTPRF-209ENST00000438120 MCRIP2Q9BUT9 160 aaKnown RBP13.95□□□□□ -0.18
PTPRF-209ENST00000438120 A6NNC1 897 aa13.94□□□□□ -0.18
PTPRF-209ENST00000438120 RNASE2P10153 161 aaKnown RBP13.94□□□□□ -0.18
PTPRF-209ENST00000438120 GATD1Q8NB37 220 aa13.94□□□□□ -0.18
PTPRF-209ENST00000438120 CSTL1Q9H114 145 aa13.94□□□□□ -0.18
PTPRF-209ENST00000438120 AMBPP02760 352 aa13.94□□□□□ -0.18
PTPRF-209ENST00000438120 NDUFAF3Q9BU61 184 aa13.94□□□□□ -0.18
PTPRF-209ENST00000438120 CADP27708 2225 aa13.94□□□□□ -0.18
PTPRF-209ENST00000438120 TMEM256Q8N2U0 113 aa13.94□□□□□ -0.18
PTPRF-209ENST00000438120 hDV102S1A0JD36 115 aa13.93□□□□□ -0.18
PTPRF-209ENST00000438120 M0R2P5 195 aa13.93□□□□□ -0.18
PTPRF-209ENST00000438120 PAX4O43316 350 aa13.93□□□□□ -0.18
PTPRF-209ENST00000438120 COLCA2A8K830 154 aa13.93□□□□□ -0.18
PTPRF-209ENST00000438120 Q71RC1 249 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-209ENST00000438120 HIST3H2BBQ8N257 126 aa13.93□□□□□ -0.18
PTPRF-209ENST00000438120 JPT2Q9H910 190 aa13.93□□□□□ -0.18
PTPRF-209ENST00000438120 TRPM7Q96QT4 1865 aa13.93□□□□□ -0.18
PTPRF-209ENST00000438120 WISP1O95388 367 aa13.93□□□□□ -0.18
PTPRF-209ENST00000438120 TOMM40O96008 361 aa13.93□□□□□ -0.18
PTPRF-209ENST00000438120 SRSF4Q08170 494 aaKnown RBP13.93□□□□□ -0.18
PTPRF-209ENST00000438120 CACNA1BQ00975 2339 aa13.93□□□□□ -0.18
PTPRF-209ENST00000438120 DUX4L9Q6RFH8 374 aaPredicted RBP13.92□□□□□ -0.18
PTPRF-209ENST00000438120 OR2K2Q8NGT1 345 aa13.92□□□□□ -0.18
PTPRF-209ENST00000438120 USMG5Q96IX5 58 aa13.92□□□□□ -0.18
PTPRF-209ENST00000438120 MSRB2Q9Y3D2 182 aa13.92□□□□□ -0.18
PTPRF-209ENST00000438120 TRBV6-6A0A0A6YYG2 114 aa13.92□□□□□ -0.18
PTPRF-209ENST00000438120 TRAV13-1A0A0B4J241 112 aa13.92□□□□□ -0.18
PTPRF-209ENST00000438120 LINC00477Q96M19 166 aa13.92□□□□□ -0.18
PTPRF-209ENST00000438120 KIAA2026Q5HYC2 2103 aa13.92□□□□□ -0.18
PTPRF-209ENST00000438120 TEX43Q6ZNM6 134 aa13.92□□□□□ -0.18
PTPRF-209ENST00000438120 ZNF479Q96JC4 524 aa13.92□□□□□ -0.18
PTPRF-209ENST00000438120 PHF3Q92576 2039 aaKnown RBP13.92□□□□□ -0.18
PTPRF-209ENST00000438120 TRBV24-1A0A075B6N3 115 aa13.92□□□□□ -0.18
PTPRF-209ENST00000438120 UBE2CO00762 179 aa13.92□□□□□ -0.18
PTPRF-209ENST00000438120 DEFB131AP59861 70 aa13.92□□□□□ -0.18
PTPRF-209ENST00000438120 MORN3Q6PF18 240 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-209ENST00000438120 TRAV1-1A0A0B4J248 108 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 A0A1W2PPI3 338 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 FAM223BA6NKX1 122 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 KNCNA6PVL3 124 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 GGTLC3B5MD39 225 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 ATP6V0E1O15342 81 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 FAM223AQ8IWN6 122 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 AMN1Q8IY45 258 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 LRRK1Q38SD2 2015 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 PSCAO43653 123 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 INSP01308 110 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 CMC4P56277 68 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-209ENST00000438120 CFHR3Q02985 330 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 TMEM242Q9NWH2 141 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 ERG28Q9UKR5 140 aa13.91□□□□□ -0.18
PTPRF-209ENST00000438120 HEATR1Q9H583 2144 aaKnown RBP13.9□□□□□ -0.18
PTPRF-209ENST00000438120 SLC25A16P16260 332 aa13.9□□□□□ -0.18
PTPRF-209ENST00000438120 DKK1O94907 266 aa13.9□□□□□ -0.18
PTPRF-209ENST00000438120 PRTN3P24158 256 aa13.9□□□□□ -0.18
PTPRF-209ENST00000438120 GUSBP1Q15486 140 aa13.9□□□□□ -0.18
PTPRF-209ENST00000438120 TMEM158Q8WZ71 300 aa13.9□□□□□ -0.18
PTPRF-209ENST00000438120 SLC25A2Q9BXI2 301 aa13.9□□□□□ -0.18
PTPRF-209ENST00000438120 FHL1Q13642 323 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms