RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 HBG2P69892 147 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 FOXI2Q6ZQN5 318 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 TMEM252Q8N6L7 170 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 NMES1Q9C002 83 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 UQCC1Q9NVA1 299 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 HLA-DRB4X5D2U9 266 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 TENM2Q9NT68 2774 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 IGSF23A1L1A6 192 aa11.08□□□□□ -0.64
LIMS3-201ENST00000437679 CXorf65A6NEN9 183 aa11.08□□□□□ -0.64
LIMS3-201ENST00000437679 CYCSP99999 105 aaKnown RBP11.08□□□□□ -0.64
LIMS3-201ENST00000437679 EWSR1Q01844 656 aaKnown RBP eCLIP11.08□□□□□ -0.64
LIMS3-201ENST00000437679 PMS2P11Q13670 270 aa11.08□□□□□ -0.64
LIMS3-201ENST00000437679 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.08□□□□□ -0.64
LIMS3-201ENST00000437679 UHRF2Q96PU4 802 aa11.08□□□□□ -0.64
LIMS3-201ENST00000437679 MGST2Q99735 147 aa11.08□□□□□ -0.64
LIMS3-201ENST00000437679 C1QTNF4Q9BXJ3 329 aa11.08□□□□□ -0.64
LIMS3-201ENST00000437679 ARV1Q9H2C2 271 aa11.08□□□□□ -0.64
LIMS3-201ENST00000437679 SAV1Q9H4B6 383 aaPredicted RBP11.08□□□□□ -0.64
LIMS3-201ENST00000437679 RPRMQ9NS64 109 aa11.08□□□□□ -0.64
LIMS3-201ENST00000437679 SSNA1O43805 119 aa11.07□□□□□ -0.64
LIMS3-201ENST00000437679 CAMLGP49069 296 aa11.07□□□□□ -0.64
LIMS3-201ENST00000437679 FGL1Q08830 312 aa11.07□□□□□ -0.64
LIMS3-201ENST00000437679 GDF5OSQ5U4N7 250 aa11.07□□□□□ -0.64
LIMS3-201ENST00000437679 SPATA31B1PQ5VZV4 182 aa11.07□□□□□ -0.64
LIMS3-201ENST00000437679 EBLN2Q6P2I7 272 aa11.07□□□□□ -0.64
LIMS3-201ENST00000437679 C11orf68Q9H3H3 251 aaKnown RBP11.07□□□□□ -0.64
LIMS3-201ENST00000437679 CLEC5AQ9NY25 188 aa11.07□□□□□ -0.64
LIMS3-201ENST00000437679 E5RGE8 158 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 COX7A2P2O60397 106 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 IGKV3-20P01619 116 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 DEFB1P60022 68 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 BAXQ07812 192 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 ATP6V1FQ16864 119 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 VWC2Q2TAL6 325 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 LRRC37A5PQ49AS3 106 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 PATE2Q6UY27 113 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 Q6ZRG5 221 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 OR4B1Q8NGF8 309 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 SLC25A31Q9H0C2 315 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 XCL2Q9UBD3 114 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 WDR83OSQ9Y284 106 aa11.06□□□□□ -0.64
LIMS3-201ENST00000437679 ELOA3CA0A087WX78 387 aaPredicted RBP11.05□□□□□ -0.64
LIMS3-201ENST00000437679 LCE6AA0A183 80 aa11.05□□□□□ -0.64
LIMS3-201ENST00000437679 UBE2L5PA0A1B0GUS4 154 aa11.05□□□□□ -0.64
LIMS3-201ENST00000437679 MIFP14174 115 aa11.05□□□□□ -0.64
LIMS3-201ENST00000437679 LINC00305Q7Z4B0 112 aa11.05□□□□□ -0.64
LIMS3-201ENST00000437679 CSNK1G2-AS1Q8NCQ2 148 aa11.05□□□□□ -0.64
LIMS3-201ENST00000437679 C20orf173Q96LM9 149 aa11.05□□□□□ -0.64
LIMS3-201ENST00000437679 C17orf77Q96MU5 243 aa11.05□□□□□ -0.64
LIMS3-201ENST00000437679 CLUHP3Q96NS8 147 aa11.05□□□□□ -0.64
LIMS3-201ENST00000437679 NUPR2A6NF83 97 aa11.04□□□□□ -0.64
LIMS3-201ENST00000437679 ZNF705EA8MWA4 302 aaPredicted RBP11.04□□□□□ -0.64
LIMS3-201ENST00000437679 F6UB75 175 aa11.04□□□□□ -0.64
LIMS3-201ENST00000437679 DEFB4AO15263 64 aa11.04□□□□□ -0.64
LIMS3-201ENST00000437679 JTBO76095 146 aa11.04□□□□□ -0.64
LIMS3-201ENST00000437679 C10orf113Q5VZT2 155 aa11.04□□□□□ -0.64
LIMS3-201ENST00000437679 MIC13Q5XKP0 118 aa11.04□□□□□ -0.64
LIMS3-201ENST00000437679 OR1L4Q8NGR5 311 aa11.04□□□□□ -0.64
LIMS3-201ENST00000437679 C11orf45Q8TAV5 145 aa11.04□□□□□ -0.64
LIMS3-201ENST00000437679 LRRC20Q8TCA0 184 aa11.04□□□□□ -0.64
LIMS3-201ENST00000437679 MFFQ9GZY8 342 aa11.04□□□□□ -0.64
LIMS3-201ENST00000437679 A0A087X0K7 114 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 IGHV4-28A0A0C4DH34 117 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 A0A0J9YX75 114 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 FGF7P21781 194 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 RPL29P47914 159 aaKnown RBP11.03□□□□□ -0.64
LIMS3-201ENST00000437679 H2BFSP57053 126 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 FXYD7P58549 80 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 PRR20EP86478 221 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 PRR20CP86479 221 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 PRR20DP86480 221 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 PRR20BP86481 221 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 PRR20AP86496 221 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 PSG9Q00887 426 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 FAM78BQ5VT40 261 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 IGFL4Q6B9Z1 124 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 Q8NAQ8 132 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 TMEM37Q8WXS4 190 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 PFDN5Q99471 154 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 DNAJC4Q9NNZ3 241 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 OR5AC2Q9NZP5 309 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 SACSQ9NZJ4 4579 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 RYR3Q15413 4870 aa11.03□□□□□ -0.64
LIMS3-201ENST00000437679 TRAV8-2A0A0B4J237 113 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 MPDU1O75352 247 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 PET100P0DJ07 73 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 B2MP61769 119 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 NHLH2Q02577 135 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 OPCMLQ14982 345 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 CEMP1Q6PRD7 247 aaPredicted RBP11.02□□□□□ -0.65
LIMS3-201ENST00000437679 BPIFA4PQ86YQ2 179 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 RNF182Q8N6D2 247 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 ZNF738Q8NE65 137 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 OR5C1Q8NGR4 320 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 PPP1R1CQ8WVI7 109 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 SLC39A9Q9NUM3 307 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 KLK5Q9Y337 293 aaPredicted RBP11.02□□□□□ -0.65
LIMS3-201ENST00000437679 X6R8D5 127 aa11.02□□□□□ -0.65
LIMS3-201ENST00000437679 H0YIZ8 118 aa11.01□□□□□ -0.65
LIMS3-201ENST00000437679 MRPS12O15235 138 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms