RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 HIST1H2BDP58876 126 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 HIST1H2BCP62807 126 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 HIST2H2BEQ16778 126 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-206ENST00000429895 HIST1H2BHQ93079 126 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 HIST1H2BNQ99877 126 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 HIST1H2BMQ99879 126 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 ZNRD1Q9P1U0 126 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 IGKV1D-17A0A075B6S4 117 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 AGMATQ9BSE5 352 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 ANAPC10Q9UM13 185 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 E7EQL1 145 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 J3QRE1 110 aa12.53□□□□□ -0.4
PTPRF-206ENST00000429895 CEACAM8P31997 349 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-206ENST00000429895 RPL32P62910 135 aaKnown RBP12.53□□□□□ -0.4
PTPRF-206ENST00000429895 ZNF562Q6V9R5 426 aa12.53□□□□□ -0.4
PTPRF-206ENST00000429895 RNF5Q99942 180 aa12.53□□□□□ -0.4
PTPRF-206ENST00000429895 IGKV1-5P01602 117 aa12.53□□□□□ -0.4
PTPRF-206ENST00000429895 CGB3P0DN86 165 aa12.53□□□□□ -0.4
PTPRF-206ENST00000429895 MLANAQ16655 118 aa12.53□□□□□ -0.4
PTPRF-206ENST00000429895 GAGE13Q4V321 117 aa12.53□□□□□ -0.4
PTPRF-206ENST00000429895 ZNF581Q9P0T4 197 aa12.53□□□□□ -0.4
PTPRF-206ENST00000429895 LGALS1P09382 135 aaKnown RBP12.53□□□□□ -0.4
PTPRF-206ENST00000429895 HSD52Q0P140 79 aa12.53□□□□□ -0.4
PTPRF-206ENST00000429895 LEPROTO15243 131 aa12.53□□□□□ -0.4
PTPRF-206ENST00000429895 A6NNC1 897 aa12.52□□□□□ -0.4
PTPRF-206ENST00000429895 LINC00587B1AMM8 73 aa12.52□□□□□ -0.4
PTPRF-206ENST00000429895 TMEM158Q8WZ71 300 aa12.52□□□□□ -0.4
PTPRF-206ENST00000429895 hDV102S1A0JD36 115 aa12.52□□□□□ -0.4
PTPRF-206ENST00000429895 NTF4P34130 210 aa12.52□□□□□ -0.4
PTPRF-206ENST00000429895 RNF144BQ7Z419 303 aa12.52□□□□□ -0.4
PTPRF-206ENST00000429895 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-206ENST00000429895 GAGE12JA6NER3 117 aa12.52□□□□□ -0.41
PTPRF-206ENST00000429895 CXCL1P09341 107 aa12.52□□□□□ -0.41
PTPRF-206ENST00000429895 GAGE1Q13065 139 aa12.52□□□□□ -0.41
PTPRF-206ENST00000429895 GAGE4Q13068 117 aa12.52□□□□□ -0.41
PTPRF-206ENST00000429895 GAGE5Q13069 117 aa12.52□□□□□ -0.41
PTPRF-206ENST00000429895 DAZ1Q9NQZ3 744 aaKnown RBP12.52□□□□□ -0.41
PTPRF-206ENST00000429895 MBD3L4A6NDZ8 208 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-206ENST00000429895 MBD3L3A6NE82 208 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-206ENST00000429895 MBD3L5A6NJ08 208 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-206ENST00000429895 DAD1P61803 113 aa12.52□□□□□ -0.41
PTPRF-206ENST00000429895 GAGE2EQ4V326 116 aa12.52□□□□□ -0.41
PTPRF-206ENST00000429895 MBD3L2Q8NHZ7 208 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-206ENST00000429895 GAGE2DQ9UEU5 116 aa12.52□□□□□ -0.41
PTPRF-206ENST00000429895 SMPXQ9UHP9 88 aa12.52□□□□□ -0.41
PTPRF-206ENST00000429895 DOCK4Q8N1I0 1966 aa12.52□□□□□ -0.41
PTPRF-206ENST00000429895 TAF1LQ8IZX4 1826 aa12.52□□□□□ -0.41
PTPRF-206ENST00000429895 NUP35Q8NFH5 326 aa12.52□□□□□ -0.41
PTPRF-206ENST00000429895 TRAV8-3A0A0A6YYJ7 113 aa12.51□□□□□ -0.41
PTPRF-206ENST00000429895 CLPSP04118 112 aa12.51□□□□□ -0.41
PTPRF-206ENST00000429895 MSMBP08118 114 aa12.51□□□□□ -0.41
PTPRF-206ENST00000429895 SPTA1P02549 2419 aa12.51□□□□□ -0.41
PTPRF-206ENST00000429895 VWC2LB2RUY7 222 aa12.51□□□□□ -0.41
PTPRF-206ENST00000429895 GLRX5Q86SX6 157 aa12.51□□□□□ -0.41
PTPRF-206ENST00000429895 PRIMA1Q86XR5 153 aa12.51□□□□□ -0.41
PTPRF-206ENST00000429895 KLK9Q9UKQ9 250 aa12.51□□□□□ -0.41
PTPRF-206ENST00000429895 GUSBP1Q15486 140 aa12.51□□□□□ -0.41
PTPRF-206ENST00000429895 BCL6BQ8N143 479 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-206ENST00000429895 AHCTF1Q8WYP5 2266 aa12.51□□□□□ -0.41
PTPRF-206ENST00000429895 LURAP1LQ8IV03 231 aa12.51□□□□□ -0.41
PTPRF-206ENST00000429895 EDA2RQ9HAV5 297 aa12.51□□□□□ -0.41
PTPRF-206ENST00000429895 Q6P435 159 aa12.5□□□□□ -0.41
PTPRF-206ENST00000429895 IL17RELQ6ZVW7 336 aa12.5□□□□□ -0.41
PTPRF-206ENST00000429895 MCRIP2Q9BUT9 160 aaKnown RBP12.5□□□□□ -0.41
PTPRF-206ENST00000429895 PNRC2Q9NPJ4 139 aaKnown RBP12.5□□□□□ -0.41
PTPRF-206ENST00000429895 RTTNQ86VV8 2226 aa12.5□□□□□ -0.41
PTPRF-206ENST00000429895 LINC01619G3V211 115 aa12.5□□□□□ -0.41
PTPRF-206ENST00000429895 ZNF561-AS1K7EIQ3 104 aa12.5□□□□□ -0.41
PTPRF-206ENST00000429895 TIMM21Q9BVV7 248 aa12.5□□□□□ -0.41
PTPRF-206ENST00000429895 ATP6V0E1O15342 81 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 TNFSF13O75888 250 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 SPINK13Q1W4C9 94 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 CEP290O15078 2479 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 LINC01549A6NIU2 74 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 FAM90A2PQ658T7 463 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 C2orf82Q6UX34 121 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 ARID2Q68CP9 1835 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 AMN1Q8IY45 258 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 THADAQ6YHU6 1953 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 CGB7P0DN87 165 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 OCIAD2Q56VL3 154 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 ZNF114Q8NC26 417 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 TRIOBPQ9H2D6 2365 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 IGKV1-16P04430 117 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 SUPT4H1P63272 117 aaKnown RBP12.49□□□□□ -0.41
PTPRF-206ENST00000429895 Q6ZS92 163 aa12.49□□□□□ -0.41
PTPRF-206ENST00000429895 MYMXA0A1B0GTQ4 84 aa12.48□□□□□ -0.41
PTPRF-206ENST00000429895 MPZP25189 248 aa12.48□□□□□ -0.41
PTPRF-206ENST00000429895 SEC11AP67812 179 aa12.48□□□□□ -0.41
PTPRF-206ENST00000429895 SBF2Q86WG5 1849 aa12.48□□□□□ -0.41
PTPRF-206ENST00000429895 TET1Q8NFU7 2136 aa12.48□□□□□ -0.41
PTPRF-206ENST00000429895 HIST1H2BLQ99880 126 aa12.48□□□□□ -0.41
PTPRF-206ENST00000429895 SPOCK3Q9BQ16 436 aa12.48□□□□□ -0.41
PTPRF-206ENST00000429895 RPP25LQ8N5L8 163 aaKnown RBP12.48□□□□□ -0.41
PTPRF-206ENST00000429895 A0A087X0K7 114 aa12.47□□□□□ -0.41
PTPRF-206ENST00000429895 SIGMAR1Q99720 223 aa12.47□□□□□ -0.41
PTPRF-206ENST00000429895 LIME1Q9H400 295 aa12.47□□□□□ -0.41
PTPRF-206ENST00000429895 LINC01551Q86U37 167 aa12.47□□□□□ -0.41
PTPRF-206ENST00000429895 NDUFAF3Q9BU61 184 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms