RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 DEFA4P12838 97 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 HIST1H1BP16401 226 aaKnown RBP4.78□□□□□ -1.64
USP40-202ENST00000409945 F2RP25116 425 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 NDPQ00604 133 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 DEFB136Q30KP8 78 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 SSX9Q7RTT3 188 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 HSD17B13Q7Z5P4 300 aaPredicted RBP4.78□□□□□ -1.64
USP40-202ENST00000409945 ZNF429Q86V71 674 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 COMMD7Q86VX2 200 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 CCDC71LQ8N9Z2 235 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 TMEM167AQ8TBQ9 72 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 MYOZ3Q8TDC0 251 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 GLYATL2Q8WU03 294 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 GALNT14Q96FL9 552 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 OR5B12Q96R08 314 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 OR4C12Q96R67 309 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 HINT2Q9BX68 163 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 ZNF430Q9H8G1 570 aaPredicted RBP4.78□□□□□ -1.64
USP40-202ENST00000409945 FKBP11Q9NYL4 201 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 BET1LQ9NYM9 111 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 ZNF257Q9Y2Q1 563 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 CMYA5Q8N3K9 4069 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 PIGBOS1A0A0B4J2F0 54 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 RNF222A6NCQ9 220 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 I3L521 148 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 BRI3O95415 125 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 SERPINE2P07093 398 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 CRYGBP07316 175 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 NMBP08949 121 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 UBE2G2P60604 165 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 RPL30P62888 115 aaKnown RBP4.78□□□□□ -1.64
USP40-202ENST00000409945 ATP5G2Q06055 141 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 PJVKQ0ZLH3 352 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 DEFB121Q5J5C9 76 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 PRSS54Q6PEW0 395 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 ALKAL2Q6UX46 152 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 ZNF818PQ6ZRF7 136 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 DUX3Q96PT4 197 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 GNB4Q9HAV0 340 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 FBXO7Q9Y3I1 522 aa4.78□□□□□ -1.64
USP40-202ENST00000409945 IGHV3-38A0A0C4DH36 116 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 K7EQD1 137 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 IGHV3-11P01762 117 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 GNRHRP30968 328 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 ID1P41134 155 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 PIGPP57054 158 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 RAB11AP62491 216 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 EIF5AP63241 154 aaKnown RBP4.77□□□□□ -1.65
USP40-202ENST00000409945 SRPXP78539 464 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 RPEL1Q2QD12 228 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 KRTAP7-1Q8IUC3 87 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 NECAP1Q8NC96 275 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 OR1L6Q8NGR2 347 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 RNASE11Q8TAA1 199 aaKnown RBP4.77□□□□□ -1.65
USP40-202ENST00000409945 STOML3Q8TAV4 291 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 DCUN1D4Q92564 292 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 RBMXL1Q96E39 390 aaKnown RBP4.77□□□□□ -1.65
USP40-202ENST00000409945 TMEM56Q96MV1 263 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 ZNF471Q9BX82 626 aaPredicted RBP4.77□□□□□ -1.65
USP40-202ENST00000409945 NAA60Q9H7X0 242 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 PLEKHA3Q9HB20 300 aa4.77□□□□□ -1.65
USP40-202ENST00000409945 MPTX1A8MV57 137 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 TAAR5O14804 337 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 PGLYRP1O75594 196 aaPredicted RBP4.76□□□□□ -1.65
USP40-202ENST00000409945 ADAP1O75689 374 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 RLN2P04090 185 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 APELAP0DMC3 54 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 TPT1P13693 172 aaKnown RBP4.76□□□□□ -1.65
USP40-202ENST00000409945 GPR183P32249 361 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 LPAR6P43657 344 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 SMCO1Q147U7 214 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 USF2Q15853 346 aaPredicted RBP4.76□□□□□ -1.65
USP40-202ENST00000409945 H2BFWTQ7Z2G1 175 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 VKORC1L1Q8N0U8 176 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 PUSL1Q8N0Z8 303 aaKnown RBP4.76□□□□□ -1.65
USP40-202ENST00000409945 TTC9CQ8N5M4 171 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 RBPMSQ93062 196 aaKnown RBP4.76□□□□□ -1.65
USP40-202ENST00000409945 AQP10Q96PS8 301 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 SPAG8Q99932 426 aaPredicted RBP4.76□□□□□ -1.65
USP40-202ENST00000409945 CHRDL1Q9BU40 450 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 SLC2A9Q9NRM0 540 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 PRNDQ9UKY0 176 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 KRBOX1C9JBD0 128 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 SOX15O60248 233 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 KRASP01116 189 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 FHITP49789 147 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 AKR1C2P52895 323 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 SEC61GP60059 68 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 RND3P61587 244 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 RHOGP84095 191 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 EGFEM1PQ0D2K5 195 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 IL15RAQ13261 267 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 EIF4EBP1Q13541 118 aaPredicted RBP4.76□□□□□ -1.65
USP40-202ENST00000409945 POU2AF1Q16633 256 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 IAH1Q2TAA2 248 aaPredicted RBP4.76□□□□□ -1.65
USP40-202ENST00000409945 EIF5AL1Q6IS14 154 aaKnown RBP4.76□□□□□ -1.65
USP40-202ENST00000409945 LGI3Q8N145 548 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 EIF4E3Q8N5X7 224 aaKnown RBP4.76□□□□□ -1.65
USP40-202ENST00000409945 OR1L8Q8NGR8 309 aa4.76□□□□□ -1.65
USP40-202ENST00000409945 EEF1AKMT3Q96AZ1 226 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms