RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 ACTR3CQ9C0K3 210 aaPredicted RBP9.31□□□□□ -0.92
LINC00339-201ENST00000404210 TRAV5A0A0B4J249 113 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 HELTA6NFD8 242 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 WIPF1O43516 503 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 IGLL1P15814 213 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 RPL7P18124 248 aaKnown RBP9.3□□□□□ -0.92
LINC00339-201ENST00000404210 SULT1A2P50226 295 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 RAB5CP51148 216 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 MORN5Q5VZ52 161 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 FAM122CQ6P4D5 195 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 DPPA3Q6W0C5 159 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 TCF24Q7RTU0 167 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 BPIFA4PQ86YQ2 179 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 SCRT1Q9BWW7 348 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 SLC25A22Q9H936 323 aa9.3□□□□□ -0.92
LINC00339-201ENST00000404210 CDC34P49427 236 aaPredicted RBP9.29□□□□□ -0.92
LINC00339-201ENST00000404210 TAS2R45P59539 299 aa9.29□□□□□ -0.92
LINC00339-201ENST00000404210 CD300EQ496F6 205 aaPredicted RBP9.29□□□□□ -0.92
LINC00339-201ENST00000404210 SPATA31B1PQ5VZV4 182 aa9.29□□□□□ -0.92
LINC00339-201ENST00000404210 LEMD1Q68G75 181 aa9.29□□□□□ -0.92
LINC00339-201ENST00000404210 SIGLEC15Q6ZMC9 328 aa9.29□□□□□ -0.92
LINC00339-201ENST00000404210 RBPMS2Q6ZRY4 209 aaKnown RBP9.29□□□□□ -0.92
LINC00339-201ENST00000404210 MIR17HGQ75NE6 70 aa9.29□□□□□ -0.92
LINC00339-201ENST00000404210 STXBP6Q8NFX7 210 aa9.29□□□□□ -0.92
LINC00339-201ENST00000404210 RAB24Q969Q5 203 aa9.29□□□□□ -0.92
LINC00339-201ENST00000404210 FAM167A-AS1Q96KT0 104 aa9.29□□□□□ -0.92
LINC00339-201ENST00000404210 TMEM14CQ9P0S9 112 aa9.29□□□□□ -0.92
LINC00339-201ENST00000404210 CTXND1A0A1B0GTU2 59 aa9.28□□□□□ -0.92
LINC00339-201ENST00000404210 TSPAN4O14817 238 aa9.28□□□□□ -0.92
LINC00339-201ENST00000404210 MRPS12O15235 138 aaKnown RBP9.28□□□□□ -0.92
LINC00339-201ENST00000404210 STAG3L2P0CL84 134 aa9.28□□□□□ -0.92
LINC00339-201ENST00000404210 STAG3L3P0CL85 134 aa9.28□□□□□ -0.92
LINC00339-201ENST00000404210 GALR1P47211 349 aa9.28□□□□□ -0.92
LINC00339-201ENST00000404210 PAFAH1B2P68402 229 aa9.28□□□□□ -0.92
LINC00339-201ENST00000404210 SLC25A2Q9BXI2 301 aa9.28□□□□□ -0.92
LINC00339-201ENST00000404210 OR51M1Q9H341 326 aa9.28□□□□□ -0.92
LINC00339-201ENST00000404210 SMAD5-AS1Q9Y6J3 95 aa9.28□□□□□ -0.92
LINC00339-201ENST00000404210 ZNF785A8K8V0 405 aa9.27□□□□□ -0.93
LINC00339-201ENST00000404210 RPL11P62913 178 aaKnown RBP9.27□□□□□ -0.93
LINC00339-201ENST00000404210 ZNF726P1Q15940 193 aa9.27□□□□□ -0.93
LINC00339-201ENST00000404210 KHDC3LQ587J8 217 aa9.27□□□□□ -0.93
LINC00339-201ENST00000404210 LCN12Q6JVE5 192 aa9.27□□□□□ -0.93
LINC00339-201ENST00000404210 TEX261Q6UWH6 196 aa9.27□□□□□ -0.93
LINC00339-201ENST00000404210 ALKAL2Q6UX46 152 aa9.27□□□□□ -0.93
LINC00339-201ENST00000404210 PQLC2Q6ZP29 291 aa9.27□□□□□ -0.93
LINC00339-201ENST00000404210 RNF141Q8WVD5 230 aa9.27□□□□□ -0.93
LINC00339-201ENST00000404210 MBD3L1Q8WWY6 194 aa9.27□□□□□ -0.93
LINC00339-201ENST00000404210 A0A087X0K7 114 aa9.26□□□□□ -0.93
LINC00339-201ENST00000404210 TRAV2A0A0B4J234 112 aa9.26□□□□□ -0.93
LINC00339-201ENST00000404210 HIST1H1EP10412 219 aaKnown RBP9.26□□□□□ -0.93
LINC00339-201ENST00000404210 ATF4P18848 351 aaPredicted RBP9.26□□□□□ -0.93
LINC00339-201ENST00000404210 MEOX2P50222 304 aa9.26□□□□□ -0.93
LINC00339-201ENST00000404210 OXLD1Q5BKU9 147 aa9.26□□□□□ -0.93
LINC00339-201ENST00000404210 TMEM61Q8N0U2 210 aa9.26□□□□□ -0.93
LINC00339-201ENST00000404210 ZNF503Q96F45 646 aa9.26□□□□□ -0.93
LINC00339-201ENST00000404210 SPAG8Q99932 426 aaPredicted RBP9.26□□□□□ -0.93
LINC00339-201ENST00000404210 PAXXQ9BUH6 204 aa9.26□□□□□ -0.93
LINC00339-201ENST00000404210 ZMAT5Q9UDW3 170 aaKnown RBP9.26□□□□□ -0.93
LINC00339-201ENST00000404210 SELENOKQ9Y6D0 94 aa9.26□□□□□ -0.93
LINC00339-201ENST00000404210 IZUMO1RA6ND01 250 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 DNASE2O00115 360 aaPredicted RBP9.25□□□□□ -0.93
LINC00339-201ENST00000404210 CXorf1O96002 111 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 IFNA7P01567 189 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 H2AFB1P0C5Y9 115 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 IGLC2P0DOY2 106 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 GP9P14770 177 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 FHITP49789 147 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 GUK1Q16774 197 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 SAMD5Q5TGI4 173 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 SSX7Q7RTT5 188 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 ZNF680Q8NEM1 530 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 FAM213BQ8TBF2 198 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 LRRC20Q8TCA0 184 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 C17orf77Q96MU5 243 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 MS4A6AQ9H2W1 248 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 HRH4Q9H3N8 390 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 NRN1Q9NPD7 142 aa9.25□□□□□ -0.93
LINC00339-201ENST00000404210 TRRAPQ9Y4A5 3859 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 IGKV3-7A0A075B6H7 116 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 H3BQ15 152 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 K7EQG2 157 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 HMGB3O15347 200 aaKnown RBP9.24□□□□□ -0.93
LINC00339-201ENST00000404210 OR7C2O60412 319 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 EIF3GO75821 320 aaKnown RBP eCLIP9.24□□□□□ -0.93
LINC00339-201ENST00000404210 NBEAP1P0C6P0 100 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 PYYP10082 97 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 CMC4P56277 68 aaPredicted RBP9.24□□□□□ -0.93
LINC00339-201ENST00000404210 BLOC1S1P78537 153 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 EGFEM1PQ0D2K5 195 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 FAM74A1Q5RGS3 127 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 SAMD13Q5VXD3 122 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 LCN15Q6UWW0 184 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 SUN5Q8TC36 379 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 DCANP1Q8TF63 244 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 FXYD5Q96DB9 178 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 SAT2Q96F10 170 aaPredicted RBP9.24□□□□□ -0.93
LINC00339-201ENST00000404210 ZNF586Q9NXT0 402 aa9.24□□□□□ -0.93
LINC00339-201ENST00000404210 TRBV19A0A075B6N1 114 aa9.23□□□□□ -0.93
LINC00339-201ENST00000404210 TRAV1-1A0A0B4J248 108 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms