RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 MLXQ9UH92 298 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 ZNF256Q9Y2P7 627 aaPredicted RBP6.91□□□□□ -1.3
VPS53-203ENST00000401468 PXMP4Q9Y6I8 212 aa6.91□□□□□ -1.3
VPS53-203ENST00000401468 IGHV3OR16-8A0A075B7F1 116 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 BORCS7-ASMTA0A0B4J1R7 106 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 ZNF320A2RRD8 509 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 C17orf112F2Z3M2 114 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 H3BRN7 92 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 APOHP02749 345 aaPredicted RBP6.9□□□□□ -1.3
VPS53-203ENST00000401468 CD5P06127 495 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 OR5G3P0C626 314 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 SPP1P10451 314 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 NPPCP23582 126 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 ATP6V0CP27449 155 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 B2MP61769 119 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 SERF2P84101 59 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 DEFB114Q30KQ6 69 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 C1orf194Q5T5A4 169 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 C16orf54Q6UWD8 224 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 SBSPONQ8IVN8 264 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 SCGB1C1Q8TD33 95 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 GATAD1Q8WUU5 269 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 RSG1Q9BU20 258 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 C20orf24Q9BUV8 137 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 ARL6Q9H0F7 186 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 RABAC1Q9UI14 185 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 U3KQK5 164 aa6.9□□□□□ -1.3
VPS53-203ENST00000401468 HUWE1Q7Z6Z7 4374 aaKnown RBP6.9□□□□□ -1.31
VPS53-203ENST00000401468 TRAV25A0A0B4J276 109 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 A0A1W2PS18 150 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 MRPS12O15235 138 aaKnown RBP6.89□□□□□ -1.31
VPS53-203ENST00000401468 HYPMO75409 117 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 BMI1P35226 326 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 LYZP61626 148 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 Q6ZRG5 221 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 OR1L4Q8NGR5 311 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 ST8SIA2Q92186 375 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 PPP1R14BQ96C90 147 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 GNPNAT1Q96EK6 184 aaPredicted RBP6.89□□□□□ -1.31
VPS53-203ENST00000401468 WWC2-AS2Q96NR7 200 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 PFDN5Q99471 154 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 SHANK2-AS3Q9BTD1 123 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 RHPN1-AS1Q9BWJ2 59 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 SLC25A39Q9BZJ4 359 aaPredicted RBP6.89□□□□□ -1.31
VPS53-203ENST00000401468 TMEM231Q9H6L2 316 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 DNAJC4Q9NNZ3 241 aa6.89□□□□□ -1.31
VPS53-203ENST00000401468 DYNC2H1Q8NCM8 4307 aaKnown RBP6.89□□□□□ -1.31
VPS53-203ENST00000401468 TRAV2A0A0B4J234 112 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 KANTRA0A1W2PQU2 76 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 ZNF98A6NK75 572 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 TSPAN4O14817 238 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 ZNF207O43670 478 aaKnown RBP6.88□□□□□ -1.31
VPS53-203ENST00000401468 PFDN1O60925 122 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 FRMD6-AS1P0C7T7 363 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 SEC11BP0C7V7 166 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 GP9P14770 177 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 ORM2P19652 201 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 HOXA5P20719 270 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 S100A7P31151 101 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 CD300EQ496F6 205 aaPredicted RBP6.88□□□□□ -1.31
VPS53-203ENST00000401468 C10orf113Q5VZT2 155 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 S100A7AQ86SG5 101 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 ZNF709Q8N972 641 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 OR1B1Q8NGR6 318 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 C17orf77Q96MU5 243 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 GPR82Q96P67 336 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 RNF2Q99496 336 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 SH3BGRL3Q9H299 93 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 PFDN2Q9UHV9 154 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 RNF24Q9Y225 148 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 HIGD1AQ9Y241 93 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 RFNGQ9Y644 331 aa6.88□□□□□ -1.31
VPS53-203ENST00000401468 IZUMO1RA6ND01 250 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 M6PRP20645 277 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 EIF5AP63241 154 aaKnown RBP6.87□□□□□ -1.31
VPS53-203ENST00000401468 SRSF3P84103 164 aaKnown RBP6.87□□□□□ -1.31
VPS53-203ENST00000401468 GCSAMLQ5JQS6 135 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 FFAR4Q5NUL3 377 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 MORN5Q5VZ52 161 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 LINC00305Q7Z4B0 112 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 SLC51BQ86UW2 128 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 BAP18Q8IXM2 172 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 TMEM61Q8N0U2 210 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 HSD17B11Q8NBQ5 300 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 NARS2Q96I59 477 aaKnown RBP6.87□□□□□ -1.31
VPS53-203ENST00000401468 FAM167A-AS1Q96KT0 104 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 UHRF2Q96PU4 802 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 PBDC1Q9BVG4 233 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 MRPL32Q9BYC8 188 aaKnown RBP6.87□□□□□ -1.31
VPS53-203ENST00000401468 SLC25A32Q9H2D1 315 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 SEPSECSQ9HD40 501 aaKnown RBP6.87□□□□□ -1.31
VPS53-203ENST00000401468 RETNQ9HD89 108 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 SMAD5-AS1Q9Y6J3 95 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 SACSQ9NZJ4 4579 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 DNAH7Q8WXX0 4024 aa6.87□□□□□ -1.31
VPS53-203ENST00000401468 A0A087X0K7 114 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 HELTA6NFD8 242 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 ZNF785A8K8V0 405 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 COX7A2P2O60397 106 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 MBP02144 154 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms