RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PLGLB1Q02325 96 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 FAM74A1Q5RGS3 127 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 C1orf140Q5VVS0 124 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 TIFABQ6ZNK6 161 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 NTM-AS1Q6ZSK4 140 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 SCXQ7RTU7 201 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 TRAPPC6BQ86SZ2 158 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 MSRB3Q8IXL7 192 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 TTC9CQ8N5M4 171 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 OR4K13Q8NH42 304 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 RHOXF1Q8NHV9 184 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 TOMM6Q96B49 74 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 RMI2Q96E14 147 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 PEBP4Q96S96 227 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 SHANK2-AS3Q9BTD1 123 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 SNRNP25Q9BV90 132 aaKnown RBP2.79□□□□□ -1.96
HMGB1-204ENST00000399489 MRPL32Q9BYC8 188 aaKnown RBP2.79□□□□□ -1.96
HMGB1-204ENST00000399489 SAR1AQ9NR31 198 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 EDC4Q6P2E9 1401 aaKnown RBP2.78□□□□□ -1.96
HMGB1-204ENST00000399489 SCN2AQ99250 2005 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 ADAMTSL1Q8N6G6 1762 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 KMT2EQ8IZD2 1858 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 A0A0J9YWU9 116 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 FAM236AA0A1B0GUQ0 79 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 FAM236BA0A1B0GV22 79 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 IRGMA1A4Y4 181 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 C9JCJ5 164 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 TNFP01375 233 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 NUDT2P50583 147 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 SYCNQ0VAF6 134 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 SP6Q3SY56 376 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 EIF5AL1Q6IS14 154 aaKnown RBP2.78□□□□□ -1.96
HMGB1-204ENST00000399489 LINC00305Q7Z4B0 112 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 PCP2Q8IVA1 136 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 C3orf22Q8N5N4 141 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 Q8N976 141 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 TYMSOSQ8TAI1 123 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 CIRBP-AS1Q8TBR5 109 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 RNASE6Q93091 150 aaKnown RBP2.78□□□□□ -1.96
HMGB1-204ENST00000399489 SLC25A46Q96AG3 418 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 ZC2HC1AQ96GY0 325 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 LINC00052Q96N35 136 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 CIB3Q96Q77 187 aaPredicted RBP2.78□□□□□ -1.96
HMGB1-204ENST00000399489 VGLL1Q99990 258 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 BANF2Q9H503 90 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 DUSP21Q9H596 190 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 FKBP11Q9NYL4 201 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 MPC1Q9Y5U8 109 aa2.78□□□□□ -1.96
HMGB1-204ENST00000399489 MON2Q7Z3U7 1717 aa2.78□□□□□ -1.97
HMGB1-204ENST00000399489 SCN10AQ9Y5Y9 1956 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 TRAV27A0A087WT01 109 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 IGKV1D-43A0A0B4J1Z2 117 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 TRAV41A0A0B4J266 112 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 A0A1W2PRS3 328 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 A8MWV9 139 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 TAX1BP3O14907 124 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 CST7O76096 145 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 PMP2P02689 132 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 LINC00869P0C866 280 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 CGB3P0DN86 165 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 CGB7P0DN87 165 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 FABP2P12104 132 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 IFITM1P13164 125 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF14P17017 642 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF32P17041 273 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 FOXA3P55318 350 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF846Q147U1 533 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 RRN3P1Q2M238 152 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 SLC25A34Q6PIV7 304 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF720Q7Z2F6 126 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 RPS19BP1Q86WX3 136 aaKnown RBP2.77□□□□□ -1.97
HMGB1-204ENST00000399489 OR10AC1Q8NH08 325 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 ITLN2Q8WWU7 325 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF799Q96GE5 643 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 TBL1YQ9BQ87 522 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 PLA2G12AQ9BZM1 189 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 NOP16Q9Y3C1 178 aaKnown RBP2.77□□□□□ -1.97
HMGB1-204ENST00000399489 LTN1O94822 1766 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 RAI1Q7Z5J4 1906 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-204ENST00000399489 TIAM2Q8IVF5 1701 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 ADAMTS7Q9UKP4 1686 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 PHIPQ8WWQ0 1821 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 DSPPQ9NZW4 1301 aa2.77□□□□□ -1.97
HMGB1-204ENST00000399489 IGHV1-58A0A0C4DH39 117 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 IGLL5B9A064 214 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 RPL36A-HNRNPH2H7BZ11 118 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 OR2T1O43869 369 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 NAPSAO96009 420 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 SRP19P09132 144 aaKnown RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 OR5AC1P0C628 307 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 LGALS3P17931 250 aaKnown RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 RPL22P35268 128 aaKnown RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 TMEM258P61165 79 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 DCDP81605 110 aaKnown RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 IL17AQ16552 155 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 LPAL2Q16609 132 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF880Q6PDB4 577 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 IZUMO2Q6UXV1 221 aa2.76□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF705AQ6ZN79 300 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-204ENST00000399489 SAXO1Q8IYX7 474 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms