RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 MCRIP2Q9BUT9 160 aaKnown RBP10.09□□□□□ -0.79
SHMT1-205ENST00000395684 OTORQ9NRC9 128 aa10.09□□□□□ -0.79
SHMT1-205ENST00000395684 IGHV1-3A0A0C4DH29 117 aa10.09□□□□□ -0.79
SHMT1-205ENST00000395684 PAX2Q02962 417 aa10.09□□□□□ -0.79
SHMT1-205ENST00000395684 ZNF738Q8NE65 137 aa10.09□□□□□ -0.79
SHMT1-205ENST00000395684 INSIG2Q9Y5U4 225 aa10.09□□□□□ -0.79
SHMT1-205ENST00000395684 HAX1O00165 279 aa10.08□□□□□ -0.8
SHMT1-205ENST00000395684 HOXB4P17483 251 aaPredicted RBP10.08□□□□□ -0.8
SHMT1-205ENST00000395684 UBE2V1Q13404 147 aa10.08□□□□□ -0.8
SHMT1-205ENST00000395684 C16orf54Q6UWD8 224 aa10.08□□□□□ -0.8
SHMT1-205ENST00000395684 C17orf77Q96MU5 243 aa10.08□□□□□ -0.8
SHMT1-205ENST00000395684 FBXL15Q9H469 300 aa10.08□□□□□ -0.8
SHMT1-205ENST00000395684 CBY1Q9Y3M2 126 aa10.08□□□□□ -0.8
SHMT1-205ENST00000395684 TACC2O95359 2948 aa10.08□□□□□ -0.8
SHMT1-205ENST00000395684 MALRD1Q5VYJ5 2156 aa10.08□□□□□ -0.8
SHMT1-205ENST00000395684 I3L2K1 104 aa10.08□□□□□ -0.8
SHMT1-205ENST00000395684 ST20Q9HBF5 79 aa10.08□□□□□ -0.8
SHMT1-205ENST00000395684 TMEM14CQ9P0S9 112 aa10.08□□□□□ -0.8
SHMT1-205ENST00000395684 ZGRF1Q86YA3 2104 aa10.07□□□□□ -0.8
SHMT1-205ENST00000395684 E7EQL1 145 aa10.07□□□□□ -0.8
SHMT1-205ENST00000395684 BUB1B-PAK6H3BSN5 160 aa10.07□□□□□ -0.8
SHMT1-205ENST00000395684 IGKV1-17P01599 117 aa10.07□□□□□ -0.8
SHMT1-205ENST00000395684 MPV17L2Q567V2 206 aa10.07□□□□□ -0.8
SHMT1-205ENST00000395684 SRSF12Q8WXF0 261 aaKnown RBP10.07□□□□□ -0.8
SHMT1-205ENST00000395684 DYNLRB1Q9NP97 96 aa10.07□□□□□ -0.8
SHMT1-205ENST00000395684 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.07□□□□□ -0.8
SHMT1-205ENST00000395684 PRRG2O14669 202 aa10.07□□□□□ -0.8
SHMT1-205ENST00000395684 RBP4P02753 201 aa10.07□□□□□ -0.8
SHMT1-205ENST00000395684 C21orf62-AS1Q17RA5 79 aa10.07□□□□□ -0.8
SHMT1-205ENST00000395684 ZC2HC1AQ96GY0 325 aa10.07□□□□□ -0.8
SHMT1-205ENST00000395684 TMUB1Q9BVT8 246 aa10.07□□□□□ -0.8
SHMT1-205ENST00000395684 ANKRD11Q6UB99 2663 aaPredicted RBP10.06□□□□□ -0.8
SHMT1-205ENST00000395684 SHISA9B4DS77 424 aa10.06□□□□□ -0.8
SHMT1-205ENST00000395684 LIPFP07098 398 aa10.06□□□□□ -0.8
SHMT1-205ENST00000395684 CSN3P07498 182 aa10.06□□□□□ -0.8
SHMT1-205ENST00000395684 RBPJQ06330 500 aa10.06□□□□□ -0.8
SHMT1-205ENST00000395684 NEU4Q8WWR8 484 aaPredicted RBP10.06□□□□□ -0.8
SHMT1-205ENST00000395684 TNFRSF14Q92956 283 aa10.06□□□□□ -0.8
SHMT1-205ENST00000395684 RASL11BQ9BPW5 248 aa10.06□□□□□ -0.8
SHMT1-205ENST00000395684 JKAMPQ9P055 326 aa10.06□□□□□ -0.8
SHMT1-205ENST00000395684 LYNX1G3V0Z9 82 aa10.06□□□□□ -0.8
SHMT1-205ENST00000395684 ARMS2P0C7Q2 107 aa10.06□□□□□ -0.8
SHMT1-205ENST00000395684 LYNX1P0DP58 116 aa10.06□□□□□ -0.8
SHMT1-205ENST00000395684 RNASE8Q8TDE3 154 aaKnown RBP10.06□□□□□ -0.8
SHMT1-205ENST00000395684 RALYQ9UKM9 306 aaKnown RBP10.06□□□□□ -0.8
SHMT1-205ENST00000395684 TRBV19A0A075B6N1 114 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 H0Y8G0 127 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 OR5AL1P0C617 328 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 HTR1DP28221 377 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 ARL6IP6Q8N6S5 226 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 NGBQ9NPG2 151 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 LOC105371242A0A075B767 164 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 A0A1B0GUT8 65 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 KLK10O43240 276 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 COX7A1P24310 79 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 PMCHL2Q9BQD1 86 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 MAP1LC3CQ9BXW4 147 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 TMEM191AQ9H0A3 160 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 CSMD1Q96PZ7 3565 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 PIEZO2Q9H5I5 2752 aa10.05□□□□□ -0.8
SHMT1-205ENST00000395684 VSTM5A8MXK1 200 aa10.04□□□□□ -0.8
SHMT1-205ENST00000395684 NUDT3O95989 172 aa10.04□□□□□ -0.8
SHMT1-205ENST00000395684 CRIP1P50238 77 aa10.04□□□□□ -0.8
SHMT1-205ENST00000395684 TCF15Q12870 199 aa10.04□□□□□ -0.8
SHMT1-205ENST00000395684 ERASQ7Z444 233 aa10.04□□□□□ -0.8
SHMT1-205ENST00000395684 TIMM8BQ9Y5J9 83 aaPredicted RBP10.04□□□□□ -0.8
SHMT1-205ENST00000395684 TRBV6-1A0A0K0K1D8 114 aa10.04□□□□□ -0.8
SHMT1-205ENST00000395684 K7EIM0 57 aa10.04□□□□□ -0.8
SHMT1-205ENST00000395684 SLC25A34Q6PIV7 304 aa10.04□□□□□ -0.8
SHMT1-205ENST00000395684 PET117Q6UWS5 81 aa10.04□□□□□ -0.8
SHMT1-205ENST00000395684 SIGLEC15Q6ZMC9 328 aa10.04□□□□□ -0.8
SHMT1-205ENST00000395684 SHANK2-AS3Q9BTD1 123 aa10.04□□□□□ -0.8
SHMT1-205ENST00000395684 SCRT2Q9NQ03 307 aa10.04□□□□□ -0.8
SHMT1-205ENST00000395684 IGHV2-70DA0A0C4DH43 119 aa10.03□□□□□ -0.8
SHMT1-205ENST00000395684 FBLN7Q53RD9 439 aa10.03□□□□□ -0.8
SHMT1-205ENST00000395684 TPRP12270 2363 aaKnown RBP10.03□□□□□ -0.8
SHMT1-205ENST00000395684 PLGLAQ15195 96 aa10.03□□□□□ -0.8
SHMT1-205ENST00000395684 ANKRD39Q53RE8 183 aa10.03□□□□□ -0.8
SHMT1-205ENST00000395684 LDLRAD2Q5SZI1 272 aa10.03□□□□□ -0.8
SHMT1-205ENST00000395684 BVES-AS1Q5T3Y7 98 aa10.03□□□□□ -0.8
SHMT1-205ENST00000395684 BPIFA4PQ86YQ2 179 aa10.03□□□□□ -0.8
SHMT1-205ENST00000395684 TMEM75Q8N9X5 138 aa10.03□□□□□ -0.8
SHMT1-205ENST00000395684 RPEQ96AT9 228 aa10.03□□□□□ -0.8
SHMT1-205ENST00000395684 SCNM1Q9BWG6 230 aa10.03□□□□□ -0.8
SHMT1-205ENST00000395684 PSG8Q9UQ74 426 aa10.03□□□□□ -0.8
SHMT1-205ENST00000395684 APC2O95996 2303 aa10.02□□□□□ -0.8
SHMT1-205ENST00000395684 H3BRN7 92 aa10.02□□□□□ -0.8
SHMT1-205ENST00000395684 M0R3E3 92 aa10.02□□□□□ -0.8
SHMT1-205ENST00000395684 BCL6BQ8N143 479 aaPredicted RBP10.02□□□□□ -0.8
SHMT1-205ENST00000395684 ZNF491Q8N8L2 437 aa10.02□□□□□ -0.8
SHMT1-205ENST00000395684 ABHD17AQ96GS6 310 aa10.02□□□□□ -0.8
SHMT1-205ENST00000395684 HSPB8Q9UJY1 196 aa10.02□□□□□ -0.8
SHMT1-205ENST00000395684 HSBP1L1C9JCN9 74 aa10.02□□□□□ -0.81
SHMT1-205ENST00000395684 TAX1BP3O14907 124 aa10.02□□□□□ -0.81
SHMT1-205ENST00000395684 PSG3Q16557 428 aa10.02□□□□□ -0.81
SHMT1-205ENST00000395684 ACACAQ13085 2346 aa10.02□□□□□ -0.81
SHMT1-205ENST00000395684 LY6LH3BQJ8 138 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 MRPS12O15235 138 aaKnown RBP10.01□□□□□ -0.81
SHMT1-205ENST00000395684 CNIH1O95406 144 aa10.01□□□□□ -0.81
SHMT1-205ENST00000395684 RBX1P62877 108 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms