RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 OR2T35Q8NGX2 323 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 AP3S1Q92572 193 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 YPEL2Q96QA6 119 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 SLC25A21Q9BQT8 299 aaPredicted RBP0.57□□□□□ -2.32
VPS13A-206ENST00000376646 SCN3AQ9NY46 2000 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 SS18L2Q9UHA2 77 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 PCTPQ9UKL6 214 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 PRNDQ9UKY0 176 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 ZFP30Q9Y2G7 519 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 DSTQ03001 7570 aaKnown RBP0.57□□□□□ -2.32
VPS13A-206ENST00000376646 MYH10P35580 1976 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 LOC110117498A0A087WWA1 95 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 ZNF736B4DX44 427 aaPredicted RBP0.57□□□□□ -2.32
VPS13A-206ENST00000376646 NDUFC2O95298 119 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 FAM19A2Q8N3H0 131 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 TMEM254Q8TBM7 123 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 CCDC94Q9BW85 323 aaPredicted RBP0.57□□□□□ -2.32
VPS13A-206ENST00000376646 CDC42SE1Q9NRR8 79 aa0.57□□□□□ -2.32
VPS13A-206ENST00000376646 ABCA13Q86UQ4 5058 aa0.56□□□□□ -2.32
VPS13A-206ENST00000376646 ROS1P08922 2347 aa0.56□□□□□ -2.32
VPS13A-206ENST00000376646 EPPK1P58107 5090 aaKnown RBP0.56□□□□□ -2.32
VPS13A-206ENST00000376646 GGCTO75223 188 aaKnown RBP0.56□□□□□ -2.32
VPS13A-206ENST00000376646 NFYBP25208 207 aa0.56□□□□□ -2.32
VPS13A-206ENST00000376646 PHBP35232 272 aa0.56□□□□□ -2.32
VPS13A-206ENST00000376646 SNCBQ16143 134 aa0.56□□□□□ -2.32
VPS13A-206ENST00000376646 OR10K1Q8NGX5 313 aa0.56□□□□□ -2.32
VPS13A-206ENST00000376646 PAIP2Q9BPZ3 127 aaKnown RBP0.56□□□□□ -2.32
VPS13A-206ENST00000376646 LINC00467Q9BRT7 94 aa0.56□□□□□ -2.32
VPS13A-206ENST00000376646 NPCDR1Q9BY65 106 aa0.56□□□□□ -2.32
VPS13A-206ENST00000376646 ACACBO00763 2458 aa0.56□□□□□ -2.32
VPS13A-206ENST00000376646 HIVEP3Q5T1R4 2406 aa0.56□□□□□ -2.32
VPS13A-206ENST00000376646 DOCK4Q8N1I0 1966 aa0.56□□□□□ -2.32
VPS13A-206ENST00000376646 MUC16Q8WXI7 14507 aa0.56□□□□□ -2.32
VPS13A-206ENST00000376646 TCRBV4S1A1TA0A5B7 111 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 A8MWV9 139 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 H7C1C5 153 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 DHFRP00374 187 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 IFNA1P01562 189 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 DYNLT3P51808 116 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 ROMO1P60602 79 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 LCN6P62502 163 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 MYL5Q02045 173 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 AKR1C8PQ5T2L2 129 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 EIF5AL1Q6IS14 154 aaKnown RBP0.55□□□□□ -2.32
VPS13A-206ENST00000376646 SMIM20Q8N5G0 67 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 ST6GALNAC3Q8NDV1 305 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 CANT1Q8WVQ1 401 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 MRPL57Q9BQC6 102 aaKnown RBP0.55□□□□□ -2.32
VPS13A-206ENST00000376646 SSR3Q9UNL2 185 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 NCOA6Q14686 2063 aaPredicted RBP0.55□□□□□ -2.32
VPS13A-206ENST00000376646 FAM208BQ5VWN6 2430 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 TNRC6AQ8NDV7 1962 aaKnown RBP0.55□□□□□ -2.32
VPS13A-206ENST00000376646 DUXBA0A1W2PPF3 345 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 RIIAD1A6NNX1 92 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 B4DSR2 109 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 AIPO00170 330 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 DNAL4O96015 105 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 CRHP06850 196 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 KRTAP2-3P0C7H8 128 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 G0S2P27469 103 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 PPP1R2P41236 205 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 INSL3P51460 131 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 GNG3P63215 75 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 PPP1R2P3Q6NXS1 205 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 TMED4Q7Z7H5 227 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 OR5D14Q8NGL3 314 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 OR13C6PQ8NH95 151 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 ZHX1-C8orf76Q96EF9 292 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 LYSMD1Q96S90 227 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 GPER1Q99527 375 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 GINS3Q9BRX5 216 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 PBDC1Q9BVG4 233 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 KRTAP2-4Q9BYR9 128 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 LYRM2Q9NU23 88 aaPredicted RBP0.55□□□□□ -2.32
VPS13A-206ENST00000376646 TAS2R7Q9NYW3 318 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 CHCHD2Q9Y6H1 151 aaPredicted RBP0.55□□□□□ -2.32
VPS13A-206ENST00000376646 NUP210LQ5VU65 1888 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 ATRQ13535 2644 aa0.55□□□□□ -2.32
VPS13A-206ENST00000376646 EIF3AQ14152 1382 aaKnown RBP0.55□□□□□ -2.32
VPS13A-206ENST00000376646 TLCD2A6NGC4 264 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 TMEM238C9JI98 176 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 MFSD11O43934 449 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 CD2P06729 351 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 HLA-EP13747 358 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 ZNF25P17030 456 aaPredicted RBP0.54□□□□□ -2.32
VPS13A-206ENST00000376646 TAS2R41P59536 307 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 MPV17LQ2QL34 196 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 DEFB115Q30KQ5 88 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 SPRNQ5BIV9 151 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 FAM74A1Q5RGS3 127 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 GDF5OSQ5U4N7 250 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 LYG2Q86SG7 212 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 C4orf3Q8WVX3 66 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 PATE1Q8WXA2 126 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 BORCS5Q969J3 196 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 HOPXQ9BPY8 73 aaPredicted RBP0.54□□□□□ -2.32
VPS13A-206ENST00000376646 OR2J1Q9GZK6 312 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 GID8Q9NWU2 228 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 LY96Q9Y6Y9 160 aa0.54□□□□□ -2.32
VPS13A-206ENST00000376646 UBR2Q8IWV8 1755 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms