RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 GAGE2BQ13066 116 aa11.19□□□□□ -0.62
COL4A1-201ENST00000375820 ZFAND6Q6FIF0 208 aa11.19□□□□□ -0.62
COL4A1-201ENST00000375820 IGLV3-12A0A075B6K2 115 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 VWC2LB2RUY7 222 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 BUB1B-PAK6H3BSN5 160 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 NABP1Q96AH0 204 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 ANAPC10Q9UM13 185 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 RNF223E7ERA6 249 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 ZFP36L1Q07352 338 aaKnown RBP11.18□□□□□ -0.62
COL4A1-201ENST00000375820 PSG3Q16557 428 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 RASL10AQ92737 203 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 GAFA1Q96PS6 74 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 SPTA1P02549 2419 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 OVOL3O00110 214 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 IL18BPO95998 194 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 PRIMA1Q86XR5 153 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 C8orf49Q96NF6 230 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 RHPN1-AS1Q9BWJ2 59 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 NYNRINQ9P2P1 1898 aaKnown RBP11.18□□□□□ -0.62
COL4A1-201ENST00000375820 LEPROTO15243 131 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 PRB1P04280 392 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 UBE2CO00762 179 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 SPSB3Q6PJ21 355 aa11.18□□□□□ -0.62
COL4A1-201ENST00000375820 IGHV3-38A0A0C4DH36 116 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 DEFB131AP59861 70 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 SUPT4H1P63272 117 aaKnown RBP11.17□□□□□ -0.62
COL4A1-201ENST00000375820 C3orf56Q8N813 242 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 GAGE12JA6NER3 117 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 GAGE1Q13065 139 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 GAGE4Q13068 117 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 GAGE5Q13069 117 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 MPV17L2Q567V2 206 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 SLC25A48Q6ZT89 311 aaKnown RBP11.17□□□□□ -0.62
COL4A1-201ENST00000375820 KIF26BQ2KJY2 2108 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 SRRM5B3KS81 715 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 PFN2P35080 140 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 STPG4Q8N801 248 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 J3QRE1 110 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 GATA4P43694 442 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 LINC01551Q86U37 167 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 RPP25LQ8N5L8 163 aaKnown RBP11.17□□□□□ -0.62
COL4A1-201ENST00000375820 IGLV3-19P01714 112 aa11.17□□□□□ -0.62
COL4A1-201ENST00000375820 PRR30Q53SZ7 412 aaPredicted RBP11.17□□□□□ -0.62
COL4A1-201ENST00000375820 C5orf64Q2M2E5 130 aa11.16□□□□□ -0.62
COL4A1-201ENST00000375820 GREB1Q4ZG55 1949 aa11.16□□□□□ -0.62
COL4A1-201ENST00000375820 TIMM21Q9BVV7 248 aa11.16□□□□□ -0.62
COL4A1-201ENST00000375820 F5H768 121 aa11.16□□□□□ -0.62
COL4A1-201ENST00000375820 SAA4P35542 130 aa11.16□□□□□ -0.62
COL4A1-201ENST00000375820 YLPM1P49750 1951 aaKnown RBP11.16□□□□□ -0.62
COL4A1-201ENST00000375820 TRBV7-1A0A0A6YYK4 115 aa11.16□□□□□ -0.62
COL4A1-201ENST00000375820 CYTL1Q9NRR1 136 aa11.16□□□□□ -0.62
COL4A1-201ENST00000375820 COL5A3P25940 1745 aaPredicted RBP11.16□□□□□ -0.62
COL4A1-201ENST00000375820 B4DSR2 109 aa11.16□□□□□ -0.62
COL4A1-201ENST00000375820 IGKV1-16P04430 117 aa11.16□□□□□ -0.62
COL4A1-201ENST00000375820 PLSCR4Q9NRQ2 329 aa11.16□□□□□ -0.62
COL4A1-201ENST00000375820 VCYO14598 125 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 SPINK13Q1W4C9 94 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 TET1Q8NFU7 2136 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 TNFSF13O75888 250 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 PLEKHB2Q96CS7 222 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 POLEQ07864 2286 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 C9JAW5 83 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 C3orf79P0CE67 100 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 CGB3P0DN86 165 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 KIR3DS1Q14943 382 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 IL17RELQ6ZVW7 336 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.15□□□□□ -0.62
COL4A1-201ENST00000375820 TRAV26-2A0A0B4J265 109 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 FGF16O43320 207 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 CLPSL2Q6UWE3 100 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 HAPLN4Q86UW8 402 aa11.15□□□□□ -0.62
COL4A1-201ENST00000375820 ARID2Q68CP9 1835 aa11.15□□□□□ -0.63
COL4A1-201ENST00000375820 THADAQ6YHU6 1953 aa11.15□□□□□ -0.63
COL4A1-201ENST00000375820 A0A1B0GUS0 222 aa11.15□□□□□ -0.63
COL4A1-201ENST00000375820 SS18Q15532 418 aa11.15□□□□□ -0.63
COL4A1-201ENST00000375820 SPOCK3Q9BQ16 436 aa11.15□□□□□ -0.63
COL4A1-201ENST00000375820 TMEM213A2RRL7 107 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 IGKV1D-17A0A075B6S4 117 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 TRAV12-2A0A075B6T6 113 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 SEC11AP67812 179 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 C20orf204Q6ZNR8 217 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 SIGLEC9Q9Y336 463 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 FANCMQ8IYD8 2048 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 BRCA1P38398 1863 aaKnown RBP11.14□□□□□ -0.63
COL4A1-201ENST00000375820 DIDO1Q9BTC0 2240 aaKnown RBP11.14□□□□□ -0.63
COL4A1-201ENST00000375820 A0A0G2JRQ6 117 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 PRSS57Q6UWY2 283 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 COLCA2A8K830 154 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 ZC2HC1BQ5TFG8 222 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 TRGV9Q99603 122 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 FAM90A9PA6NNJ1 464 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 NXPH4O95158 308 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 FAM110DQ8TAY7 271 aaPredicted RBP11.14□□□□□ -0.63
COL4A1-201ENST00000375820 FREM3P0C091 2139 aa11.14□□□□□ -0.63
COL4A1-201ENST00000375820 CEP250Q9BV73 2442 aa11.13□□□□□ -0.63
COL4A1-201ENST00000375820 NEGR1Q7Z3B1 354 aa11.13□□□□□ -0.63
COL4A1-201ENST00000375820 TNFRSF14Q92956 283 aa11.13□□□□□ -0.63
COL4A1-201ENST00000375820 NEUROG3Q9Y4Z2 214 aa11.13□□□□□ -0.63
COL4A1-201ENST00000375820 IGLV3-32A0A0A0MS00 114 aa11.13□□□□□ -0.63
COL4A1-201ENST00000375820 TRAV25A0A0B4J276 109 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms