RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CCDC168Q8NDH2 2452 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 ANKRD36CQ5JPF3 1778 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 A0A087WZ39 114 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 RPL36A-HNRNPH2H7BZ11 118 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 UBE2CO00762 179 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 PGFP49763 221 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 DSCR9P59020 149 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 FGF12P61328 243 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 RPUSD1Q9UJJ7 312 aaKnown RBP3.85□□□□□ -1.79
SCN1A-202ENST00000375405 NEUROG3Q9Y4Z2 214 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 LYNX1G3V0Z9 82 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 SCTP09683 121 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 LYNX1P0DP58 116 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 XAF1Q6GPH4 301 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 TRPT1Q86TN4 253 aaKnown RBP3.85□□□□□ -1.79
SCN1A-202ENST00000375405 IGKV2-40A0A087WW87 121 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-202ENST00000375405 A0A0G2JMM0 328 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 A0A1W2PPB8 328 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 KIR3DP1A8MWS1 328 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 NDUFB6O95139 128 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 IGKV2D-40P01614 121 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-202ENST00000375405 HIGD2BQ4VC39 106 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 RPL39P5Q59GN2 51 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 TMEM243Q9BU79 118 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 MRPL32Q9BYC8 188 aaKnown RBP3.85□□□□□ -1.79
SCN1A-202ENST00000375405 MRPL36Q9P0J6 103 aaKnown RBP3.85□□□□□ -1.79
SCN1A-202ENST00000375405 A0A0G2JK05 382 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 LY6G6CO95867 125 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 FSHBP01225 129 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 CRYBA4P53673 196 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 GNG5P63218 68 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 LY6G6FQ5SQ64 297 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 GGNQ86UU5 652 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 MYEOVQ96EZ4 313 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 ESM1Q9NQ30 184 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 IGHV1-45A0A0A0MS14 117 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 IGKV1-9A0A0C4DH69 117 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 CGAP01215 116 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 CT83Q5H943 113 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 Q8NFD4 153 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 IFI27L1Q96BM0 104 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 SP9P0CG40 484 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 CTRLP40313 264 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 FOXF2Q12947 444 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 LILRA6Q6PI73 481 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 WFDC10BQ8IUB3 73 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 NBR2O15453 112 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 SAA2P0DJI9 122 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-202ENST00000375405 DPTQ07507 201 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 FAM201AQ5SY85 155 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 SS18L2Q9UHA2 77 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 LRRC37A3O60309 1634 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 TRBV9A0A0B4J1U6 114 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 DKK1O94907 266 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 GLRX5Q86SX6 157 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 Q8N9W7 124 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 LINC01356Q8N9X3 169 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 TNRC6BQ9UPQ9 1833 aaKnown RBP3.84□□□□□ -1.79
SCN1A-202ENST00000375405 IGLV3-9A0A075B6K5 115 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 TRBV20-1A0A075B6N2 111 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 TMEM89A2RUT3 159 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 M0R2N4 97 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 IGLV3-27P01718 113 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 COX5BP10606 129 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 IFITM3Q01628 133 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 DOT1LQ8TEK3 1739 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 COX7B2Q8TF08 81 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 NRTNQ99748 197 aa3.84□□□□□ -1.79
SCN1A-202ENST00000375405 NUP98P52948 1817 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 SPTY2D1-AS1A0A0U1RR47 76 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 OVOL1O14753 267 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 OR9G9P0C7N8 305 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 KIAA0040Q15053 153 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 LINC00299Q6ZSB3 139 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 H1FOOQ8IZA3 346 aaPredicted RBP3.84□□□□□ -1.8
SCN1A-202ENST00000375405 KLF14Q8TD94 323 aaPredicted RBP3.84□□□□□ -1.8
SCN1A-202ENST00000375405 ARHGAP21Q5T5U3 1957 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 J3QKU1 62 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 IGHMP01871 453 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 PPBPP02775 128 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 ZFP36L1Q07352 338 aaKnown RBP3.84□□□□□ -1.8
SCN1A-202ENST00000375405 OXLD1Q5BKU9 147 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 SLC25A45Q8N413 288 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 C9orf62Q8N4C0 152 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 C14orf178Q8N769 122 aaPredicted RBP3.84□□□□□ -1.8
SCN1A-202ENST00000375405 SMIM4Q8WVI0 70 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 HIST1H2BAQ96A08 127 aa3.84□□□□□ -1.8
SCN1A-202ENST00000375405 LOC285556D6RIA3 1793 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 SONP18583 2426 aaKnown RBP3.83□□□□□ -1.8
SCN1A-202ENST00000375405 IGHV1OR15-9A0A0B4J2B8 117 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 CELA2BP08218 269 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-202ENST00000375405 SCAND1P57086 179 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 IFITM2Q01629 132 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 DEFB125Q8N687 156 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 IMMP2LQ96T52 175 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 PPP1R3EQ9H7J1 279 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 TSC2P49815 1807 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 PCDH15Q96QU1 1955 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 A0A1W2PQF6 199 aa3.83□□□□□ -1.8
SCN1A-202ENST00000375405 JMJD7-PLA2G4BH0Y9G9 81 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms