RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 GGACTQ9BVM4 153 aa11.24□□□□□ -0.61
SMPDL3A-201ENST00000368440 OR4C46A6NHA9 309 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 A8MZ25 164 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 BUB3O43684 328 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 CAMLGP49069 296 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 RPL11P62913 178 aaKnown RBP11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 TEPPQ6URK8 271 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 Q6ZRG5 221 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 WFDC3Q8IUB2 231 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 SBSPONQ8IVN8 264 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 BPIFCQ8NFQ6 507 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 MS4A6AQ9H2W1 248 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 HRH4Q9H3N8 390 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 LINC00862A6NCI5 91 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 AKR1C8PQ5T2L2 129 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 FAM24BQ8N5W8 94 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 GRAMD2BQ96HH9 432 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 MGST2Q99735 147 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 TUBA4BQ9H853 241 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 SRD5A3Q9H8P0 318 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 PFDN2Q9UHV9 154 aa11.23□□□□□ -0.61
SMPDL3A-201ENST00000368440 ORM2P19652 201 aa11.22□□□□□ -0.61
SMPDL3A-201ENST00000368440 VWC2Q2TAL6 325 aa11.22□□□□□ -0.61
SMPDL3A-201ENST00000368440 PXDC1Q5TGL8 231 aa11.22□□□□□ -0.61
SMPDL3A-201ENST00000368440 STXBP6Q8NFX7 210 aa11.22□□□□□ -0.61
SMPDL3A-201ENST00000368440 DOK5Q9P104 306 aa11.22□□□□□ -0.61
SMPDL3A-201ENST00000368440 AGPAT2O15120 278 aa11.21□□□□□ -0.61
SMPDL3A-201ENST00000368440 EIF3GO75821 320 aaKnown RBP eCLIP11.21□□□□□ -0.61
SMPDL3A-201ENST00000368440 CD5P06127 495 aa11.21□□□□□ -0.61
SMPDL3A-201ENST00000368440 ZNF124Q15973 351 aa11.21□□□□□ -0.61
SMPDL3A-201ENST00000368440 ZNF709Q8N972 641 aa11.21□□□□□ -0.61
SMPDL3A-201ENST00000368440 OR1B1Q8NGR6 318 aa11.21□□□□□ -0.61
SMPDL3A-201ENST00000368440 NPCDR1Q9BY65 106 aa11.21□□□□□ -0.61
SMPDL3A-201ENST00000368440 RBMY1BA6NDE4 496 aaKnown RBP11.21□□□□□ -0.62
SMPDL3A-201ENST00000368440 RBMY1EA6NEQ0 496 aaKnown RBP11.21□□□□□ -0.62
SMPDL3A-201ENST00000368440 RBMY1DP0C7P1 496 aaKnown RBP11.21□□□□□ -0.62
SMPDL3A-201ENST00000368440 LINC00869P0C866 280 aa11.21□□□□□ -0.62
SMPDL3A-201ENST00000368440 LINC00322Q6ZN03 302 aaPredicted RBP11.21□□□□□ -0.62
SMPDL3A-201ENST00000368440 LRRC20Q8TCA0 184 aa11.21□□□□□ -0.62
SMPDL3A-201ENST00000368440 WDR83OSQ9Y284 106 aa11.21□□□□□ -0.62
SMPDL3A-201ENST00000368440 DNASE2O00115 360 aaPredicted RBP11.2□□□□□ -0.62
SMPDL3A-201ENST00000368440 PAFAH1B2P68402 229 aa11.2□□□□□ -0.62
SMPDL3A-201ENST00000368440 SIGLEC15Q6ZMC9 328 aa11.2□□□□□ -0.62
SMPDL3A-201ENST00000368440 APRG1Q8IVJ8 170 aa11.2□□□□□ -0.62
SMPDL3A-201ENST00000368440 DCANP1Q8TF63 244 aa11.2□□□□□ -0.62
SMPDL3A-201ENST00000368440 PARD6GQ9BYG4 376 aaPredicted RBP11.2□□□□□ -0.62
SMPDL3A-201ENST00000368440 MAP6D1Q9H9H5 199 aa11.2□□□□□ -0.62
SMPDL3A-201ENST00000368440 SLC45A2Q9UMX9 530 aa11.2□□□□□ -0.62
SMPDL3A-201ENST00000368440 HELTA6NFD8 242 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 K7EQG2 157 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 SELENOTP62341 195 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 BLOC1S1P78537 153 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 FFAR4Q5NUL3 377 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 SAT2Q96F10 170 aaPredicted RBP11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 TRAV2A0A0B4J234 112 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 UMAD1C9J7I0 102 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 C17orf112F2Z3M2 114 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 PLP1P60201 277 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 RAB2AP61019 212 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 HAGHQ16775 308 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 LEMD1Q68G75 181 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 PATE2Q6UY27 113 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 PSMG3Q9BT73 122 aaPredicted RBP11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 SCRT1Q9BWW7 348 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 GGTLC1Q9BX51 225 aa11.19□□□□□ -0.62
SMPDL3A-201ENST00000368440 ZNF98A6NK75 572 aa11.18□□□□□ -0.62
SMPDL3A-201ENST00000368440 RAB5CP51148 216 aa11.18□□□□□ -0.62
SMPDL3A-201ENST00000368440 MIC13Q5XKP0 118 aa11.18□□□□□ -0.62
SMPDL3A-201ENST00000368440 UHRF2Q96PU4 802 aa11.18□□□□□ -0.62
SMPDL3A-201ENST00000368440 FAM110AQ9BQ89 295 aa11.18□□□□□ -0.62
SMPDL3A-201ENST00000368440 SLC25A22Q9H936 323 aa11.18□□□□□ -0.62
SMPDL3A-201ENST00000368440 RPRMQ9NS64 109 aa11.18□□□□□ -0.62
SMPDL3A-201ENST00000368440 H3BRN7 92 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 OR5G3P0C626 314 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 SLC25A39Q9BZJ4 359 aaPredicted RBP11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 HIGD1AQ9Y241 93 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 TIMM9Q9Y5J7 89 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 HMGB3O15347 200 aaKnown RBP11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 HYPMO75409 117 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 ZNF688P0C7X2 276 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 DEFB131AP59861 70 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 SERF2P84101 59 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 TMEM41BQ5BJD5 291 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 GCSAMLQ5JQS6 135 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 C1orf194Q5T5A4 169 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 OR8I2Q8N0Y5 310 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 SFT2D1Q8WV19 159 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 NRN1Q9NPD7 142 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 PXMP4Q9Y6I8 212 aa11.17□□□□□ -0.62
SMPDL3A-201ENST00000368440 HUWE1Q7Z6Z7 4374 aaKnown RBP11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 MPDU1O75352 247 aa11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 H2AFB1P0C5Y9 115 aa11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 NHLRC4P0CG21 123 aaPredicted RBP11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 PRR20EP86478 221 aa11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 PRR20CP86479 221 aa11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 PRR20DP86480 221 aa11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 PRR20BP86481 221 aa11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 PRR20AP86496 221 aa11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 FAM122CQ6P4D5 195 aa11.16□□□□□ -0.62
SMPDL3A-201ENST00000368440 LCN15Q6UWW0 184 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms