RNA–Protein interactions for RNA: ENST00000342494.7

UBE3B-202, Transcript of ubiquitin protein ligase E3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3B, Length 5,722 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-202ENST00000342494 C1orf159Q96HA4 380 aa12.2□□□□□ -0.46
UBE3B-202ENST00000342494 TRBV6-6A0A0A6YYG2 114 aa12.2□□□□□ -0.46
UBE3B-202ENST00000342494 IFI27L1Q96BM0 104 aa12.2□□□□□ -0.46
UBE3B-202ENST00000342494 GATA4P43694 442 aa12.2□□□□□ -0.46
UBE3B-202ENST00000342494 FAM110DQ8TAY7 271 aaPredicted RBP12.2□□□□□ -0.46
UBE3B-202ENST00000342494 TMEM170AQ8WVE7 144 aa12.2□□□□□ -0.46
UBE3B-202ENST00000342494 SPCS1Q9Y6A9 102 aa12.2□□□□□ -0.46
UBE3B-202ENST00000342494 LINC01619G3V211 115 aa12.2□□□□□ -0.46
UBE3B-202ENST00000342494 LYZL1Q6UWQ5 148 aa12.2□□□□□ -0.46
UBE3B-202ENST00000342494 TEX43Q6ZNM6 134 aa12.2□□□□□ -0.46
UBE3B-202ENST00000342494 FOXL1Q12952 345 aa12.2□□□□□ -0.46
UBE3B-202ENST00000342494 GNB1LQ9BYB4 327 aa12.2□□□□□ -0.46
UBE3B-202ENST00000342494 NHP2Q9NX24 153 aaKnown RBP12.2□□□□□ -0.46
UBE3B-202ENST00000342494 PAX4O43316 350 aa12.19□□□□□ -0.46
UBE3B-202ENST00000342494 LINC00587B1AMM8 73 aa12.19□□□□□ -0.46
UBE3B-202ENST00000342494 GGTLC3B5MD39 225 aa12.19□□□□□ -0.46
UBE3B-202ENST00000342494 C5orf24Q7Z6I8 188 aa12.19□□□□□ -0.46
UBE3B-202ENST00000342494 USF3Q68DE3 2245 aa12.19□□□□□ -0.46
UBE3B-202ENST00000342494 ERCC8Q13216 396 aa12.19□□□□□ -0.46
UBE3B-202ENST00000342494 C6orf226Q5I0X4 101 aa12.19□□□□□ -0.46
UBE3B-202ENST00000342494 ATP6V0E1O15342 81 aa12.19□□□□□ -0.46
UBE3B-202ENST00000342494 SH2D1AO60880 128 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 NIT1Q86X76 327 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 LSM4Q9Y4Z0 139 aaKnown RBP12.18□□□□□ -0.46
UBE3B-202ENST00000342494 NBL1P41271 181 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 SUPT4H1P63272 117 aaKnown RBP12.18□□□□□ -0.46
UBE3B-202ENST00000342494 SEC11AP67812 179 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 PLA2G2CQ5R387 149 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 ZNF562Q6V9R5 426 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 OR2K2Q8NGT1 345 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 SRSF8Q9BRL6 282 aaKnown RBP12.18□□□□□ -0.46
UBE3B-202ENST00000342494 AGMATQ9BSE5 352 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 A8MXK9 166 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 FREM3P0C091 2139 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 LINC00205P59089 165 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 NMSQ5H8A3 153 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 CHCHD1Q96BP2 118 aaKnown RBP12.18□□□□□ -0.46
UBE3B-202ENST00000342494 E9PQ18 207 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 VCYO14598 125 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 C21orf62-AS1Q17RA5 79 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 D6R8Y8 96 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 CDK2AP2O75956 126 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 PSG3Q16557 428 aa12.18□□□□□ -0.46
UBE3B-202ENST00000342494 C14orf178Q8N769 122 aaPredicted RBP12.18□□□□□ -0.46
UBE3B-202ENST00000342494 IGHV2-70DA0A0C4DH43 119 aa12.17□□□□□ -0.46
UBE3B-202ENST00000342494 IGKV1-16P04430 117 aa12.17□□□□□ -0.46
UBE3B-202ENST00000342494 RASL10AQ92737 203 aa12.17□□□□□ -0.46
UBE3B-202ENST00000342494 TMEM14EPQ6UXP3 125 aa12.17□□□□□ -0.46
UBE3B-202ENST00000342494 XCL2Q9UBD3 114 aa12.17□□□□□ -0.46
UBE3B-202ENST00000342494 F5H768 121 aa12.17□□□□□ -0.46
UBE3B-202ENST00000342494 FOXL2NBQ6ZUU3 175 aa12.17□□□□□ -0.46
UBE3B-202ENST00000342494 LYPD1Q8N2G4 141 aa12.17□□□□□ -0.46
UBE3B-202ENST00000342494 NYNRINQ9P2P1 1898 aaKnown RBP12.17□□□□□ -0.46
UBE3B-202ENST00000342494 DAD1P61803 113 aa12.17□□□□□ -0.46
UBE3B-202ENST00000342494 C5orf30Q96GV9 206 aa12.16□□□□□ -0.46
UBE3B-202ENST00000342494 PKDREJQ9NTG1 2253 aa12.16□□□□□ -0.46
UBE3B-202ENST00000342494 J3QLI3 93 aa12.16□□□□□ -0.46
UBE3B-202ENST00000342494 RNASE2P10153 161 aaKnown RBP12.16□□□□□ -0.46
UBE3B-202ENST00000342494 CEACAM8P31997 349 aaPredicted RBP12.16□□□□□ -0.46
UBE3B-202ENST00000342494 NTF4P34130 210 aa12.16□□□□□ -0.46
UBE3B-202ENST00000342494 SS18Q15532 418 aa12.16□□□□□ -0.46
UBE3B-202ENST00000342494 M0R2P5 195 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 GATD1Q8NB37 220 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 PRSS33Q8NF86 280 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 SLC25A2Q9BXI2 301 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 TRAV13-1A0A0B4J241 112 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 H3BUT2 72 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 HOXA3O43365 443 aaPredicted RBP12.15□□□□□ -0.46
UBE3B-202ENST00000342494 NPC2P61916 151 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 RNF144BQ7Z419 303 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 SMPXQ9UHP9 88 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 A0A087WWL8 130 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 TMEM238C9JI98 176 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 SRSF3P84103 164 aaKnown RBP12.15□□□□□ -0.46
UBE3B-202ENST00000342494 MCRIP2Q9BUT9 160 aaKnown RBP12.15□□□□□ -0.46
UBE3B-202ENST00000342494 AMBPP02760 352 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 CFHR2P36980 270 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 CSTL1Q9H114 145 aa12.15□□□□□ -0.46
UBE3B-202ENST00000342494 HEATR1Q9H583 2144 aaKnown RBP12.15□□□□□ -0.47
UBE3B-202ENST00000342494 F8WEM9 126 aa12.14□□□□□ -0.47
UBE3B-202ENST00000342494 CACNA1HO95180 2353 aa12.14□□□□□ -0.47
UBE3B-202ENST00000342494 C1orf122Q6ZSJ8 110 aa12.14□□□□□ -0.47
UBE3B-202ENST00000342494 ZNRD1Q9P1U0 126 aa12.14□□□□□ -0.47
UBE3B-202ENST00000342494 TRAV8-2A0A0B4J237 113 aa12.14□□□□□ -0.47
UBE3B-202ENST00000342494 RPP25LQ8N5L8 163 aaKnown RBP12.14□□□□□ -0.47
UBE3B-202ENST00000342494 PLEKHB2Q96CS7 222 aa12.14□□□□□ -0.47
UBE3B-202ENST00000342494 ZNF581Q9P0T4 197 aa12.14□□□□□ -0.47
UBE3B-202ENST00000342494 TRAV8-1A0A0A6YYK1 113 aa12.14□□□□□ -0.47
UBE3B-202ENST00000342494 LY6G6EA0A0G2JKS1 128 aa12.14□□□□□ -0.47
UBE3B-202ENST00000342494 LINC01559Q495D7 138 aa12.14□□□□□ -0.47
UBE3B-202ENST00000342494 U3KQA8 63 aa12.14□□□□□ -0.47
UBE3B-202ENST00000342494 TRAV9-2A0A087WT02 112 aa12.13□□□□□ -0.47
UBE3B-202ENST00000342494 A0A1W2PPI3 338 aa12.13□□□□□ -0.47
UBE3B-202ENST00000342494 Q8TCH9 128 aa12.13□□□□□ -0.47
UBE3B-202ENST00000342494 DOCK7Q96N67 2140 aa12.13□□□□□ -0.47
UBE3B-202ENST00000342494 DICER1Q9UPY3 1922 aaKnown RBP12.13□□□□□ -0.47
UBE3B-202ENST00000342494 MST1LQ2TV78 715 aa12.13□□□□□ -0.47
UBE3B-202ENST00000342494 LINC00518Q8N0U6 118 aa12.13□□□□□ -0.47
UBE3B-202ENST00000342494 REG4Q9BYZ8 158 aa12.13□□□□□ -0.47
UBE3B-202ENST00000342494 FER1L5A0AVI2 2057 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms