RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 K7ERJ3 54 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 ECSCRQ19T08 205 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 CCDC144NLQ6NUI1 221 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 SYNGR3O43761 229 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 KLK13Q9UKR3 277 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 TRAV14DV4A0A0A6YYC5 116 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 A0A1W2PRE2 83 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 PTGDSP41222 190 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 AMTNQ6UX39 209 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 LINC01600Q96MT4 127 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 IQCF6A8MYZ5 107 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 C11orf94C9JXX5 98 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 PLPP3O14495 311 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 GP9P14770 177 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 DEFB1P60022 68 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 LINC01590Q5TEZ4 76 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 GOLT1AQ6ZVE7 132 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 LYPD6Q86Y78 171 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 SPHK2Q9NRA0 654 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 CDX4O14627 284 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-201ENST00000341594 PDCD6O75340 191 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF793Q6ZN11 406 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 CT55Q8WUE5 264 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 FAM106CPP0CH98 169 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 FAM106AQ4KMX7 169 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 LYG1Q8N1E2 194 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 NRGNQ92686 78 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 TMEM252Q8N6L7 170 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 PILRBQ9UKJ0 227 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 TRAV8-6A0A0B4J262 113 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 IGLC2P0DOY2 106 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 IGLC3P0DOY3 106 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 TBR1Q16650 682 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 TMEM215Q68D42 235 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 FGFBP3Q8TAT2 258 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 PRDM6Q9NQX0 595 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 TRBV6-1A0A0K0K1D8 114 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 EPG5Q9HCE0 2579 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 IGHV2-26A0A0B4J1V2 119 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 IGKV1D-43A0A0B4J1Z2 117 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 CD27P26842 260 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 ICAM4Q14773 271 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 DEFB109BQ30KR1 87 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 FAM168AQ92567 244 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 KLF13Q9Y2Y9 288 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-201ENST00000341594 GNG12Q9UBI6 72 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 EPDR1Q9UM22 224 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 SPEM1Q8N4L4 309 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 ABCA12Q86UK0 2595 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 F5H768 121 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 ERG28Q9UKR5 140 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 SNURFLB1AK76 121 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 CEACAM4O75871 244 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF688P0C7X2 276 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 GATA1P15976 413 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-201ENST00000341594 PSG2P11465 335 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 FHL5Q5TD97 284 aa2.94□□□□□ -1.94
SYNE1-201ENST00000341594 NHP2Q9NX24 153 aaKnown RBP2.94□□□□□ -1.94
SYNE1-201ENST00000341594 WDR82Q6UXN9 313 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 OSR2Q8N2R0 312 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 C18orf32Q8TCD1 76 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 TMEM171Q8WVE6 324 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 C9JAW5 83 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 H7C1H1 209 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 SUPT4H1P63272 117 aaKnown RBP2.93□□□□□ -1.94
SYNE1-201ENST00000341594 RPL18Q07020 188 aaKnown RBP2.93□□□□□ -1.94
SYNE1-201ENST00000341594 APOBEC3DQ96AK3 386 aaPredicted RBP2.93□□□□□ -1.94
SYNE1-201ENST00000341594 RPUSD1Q9UJJ7 312 aaKnown RBP2.93□□□□□ -1.94
SYNE1-201ENST00000341594 HIGD1AQ9Y241 93 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 STHQ8IWL8 128 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 CLPSL1A2RUU4 121 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 GATA3P23771 443 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 WDR38Q5JTN6 314 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 VN1R2Q8NFZ6 395 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 FBXL7Q9UJT9 491 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 TRAV21A0A0B4J279 112 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 CNTFRP26992 372 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 RNASE4P34096 147 aaKnown RBP2.93□□□□□ -1.94
SYNE1-201ENST00000341594 TRAV24A0A0B4J272 114 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 H3BMG7 143 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 CD38P28907 300 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 SRD5A2P31213 254 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 FOXG1P55316 489 aaPredicted RBP2.93□□□□□ -1.94
SYNE1-201ENST00000341594 MS4A18Q3C1V0 323 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 SCNM1Q9BWG6 230 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 C3orf85A0A1B0GTC6 90 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 CXCL5P42830 114 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 RUNX3Q13761 415 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 AAED1Q7RTV5 226 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 SNHG12Q9BXW3 62 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 RNF114Q9Y508 228 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 CFHR2P36980 270 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 RBX1P62877 108 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 ACP7Q6ZNF0 438 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 PLXDC1Q8IUK5 500 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 OR5C1Q8NGR4 320 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 NDUFB3O43676 98 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 SYNJ2BPP57105 145 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 DRAM1Q8N682 238 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 NEU4Q8WWR8 484 aaPredicted RBP2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms