RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PLXNA4Q9HCM2 1894 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 ZNF688P0C7X2 276 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 HAPLN4Q86UW8 402 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 ITLN2Q8WWU7 325 aaPredicted RBP7.17□□□□□ -1.26
RTN3-202ENST00000339997 FGF11Q92914 225 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 GNB1LQ9BYB4 327 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 JPT2Q9H910 190 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 FBLN5Q9UBX5 448 aa7.17□□□□□ -1.26
RTN3-202ENST00000339997 NYNRINQ9P2P1 1898 aaKnown RBP7.17□□□□□ -1.26
RTN3-202ENST00000339997 ZNF236Q9UL36 1845 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 TRPM7Q96QT4 1865 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 PRR19A6NJB7 356 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 CD7P09564 240 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 SRSF4Q08170 494 aaKnown RBP7.16□□□□□ -1.26
RTN3-202ENST00000339997 SRSF6Q13247 344 aaKnown RBP7.16□□□□□ -1.26
RTN3-202ENST00000339997 TMEM86BQ8N661 226 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 NUP35Q8NFH5 326 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 RNF125Q96EQ8 232 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 LIME1Q9H400 295 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 SLC25A15Q9Y619 301 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 LTBRP36941 435 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 PPP1R27Q86WC6 154 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 C2orf88Q9BSF0 95 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 TLN2Q9Y4G6 2542 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 SCN10AQ9Y5Y9 1956 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 TRGV2A0A075B6R0 118 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 TRAV30A0A087WSZ9 112 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 EFEMP2O95967 443 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 ASIPP42127 132 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 NABP1Q96AH0 204 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 CST9LQ9H4G1 147 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 PATJQ8NI35 1801 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 A0A1W2PRX2 142 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 GGTLC3B5MD39 225 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 CCL1P22362 96 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 CRYGSP22914 178 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 OCIAD2Q56VL3 154 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 MRPL14Q6P1L8 145 aaKnown RBP7.16□□□□□ -1.26
RTN3-202ENST00000339997 DTX2Q86UW9 622 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 TSKUQ8WUA8 353 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 FMC1Q96HJ9 113 aa7.16□□□□□ -1.26
RTN3-202ENST00000339997 LOC102723996A0A087X1L8 192 aa7.15□□□□□ -1.26
RTN3-202ENST00000339997 FABP5P3A8MUU1 101 aa7.15□□□□□ -1.26
RTN3-202ENST00000339997 NDPQ00604 133 aa7.15□□□□□ -1.26
RTN3-202ENST00000339997 UBE2V1Q13404 147 aa7.15□□□□□ -1.26
RTN3-202ENST00000339997 SRSF8Q9BRL6 282 aaKnown RBP7.15□□□□□ -1.26
RTN3-202ENST00000339997 NDUFS8O00217 210 aa7.15□□□□□ -1.26
RTN3-202ENST00000339997 IGHV2-70P01814 119 aa7.15□□□□□ -1.26
RTN3-202ENST00000339997 ATP5J2P56134 94 aa7.15□□□□□ -1.26
RTN3-202ENST00000339997 GAGE13Q4V321 117 aa7.15□□□□□ -1.26
RTN3-202ENST00000339997 AMN1Q8IY45 258 aa7.15□□□□□ -1.26
RTN3-202ENST00000339997 MS4A6AQ9H2W1 248 aa7.15□□□□□ -1.26
RTN3-202ENST00000339997 VCX2Q9H322 139 aa7.15□□□□□ -1.26
RTN3-202ENST00000339997 IGKV1-16P04430 117 aa7.15□□□□□ -1.27
RTN3-202ENST00000339997 PSG3Q16557 428 aa7.15□□□□□ -1.27
RTN3-202ENST00000339997 ACTL10Q5JWF8 245 aa7.15□□□□□ -1.27
RTN3-202ENST00000339997 ZC2HC1BQ5TFG8 222 aa7.15□□□□□ -1.27
RTN3-202ENST00000339997 LYZL1Q6UWQ5 148 aa7.15□□□□□ -1.27
RTN3-202ENST00000339997 CACNG8Q8WXS5 425 aa7.15□□□□□ -1.27
RTN3-202ENST00000339997 IFI6P09912 130 aa7.15□□□□□ -1.27
RTN3-202ENST00000339997 QRFPP83859 136 aa7.15□□□□□ -1.27
RTN3-202ENST00000339997 FHL1Q13642 323 aa7.15□□□□□ -1.27
RTN3-202ENST00000339997 SVEP1Q4LDE5 3571 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 TCRBV4S1A1TA0A5B7 111 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 TIMM23O14925 209 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 DPM2O94777 84 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 PAX2Q02962 417 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 C3orf36Q3SXR2 165 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 UNQ6494/PRO21346Q6UXR6 183 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 FAM90A1Q86YD7 464 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 ZNF114Q8NC26 417 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 ZNF625Q96I27 306 aaPredicted RBP7.14□□□□□ -1.27
RTN3-202ENST00000339997 TMEM242Q9NWH2 141 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 ARPC1AQ92747 370 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 PNRC2Q9NPJ4 139 aaKnown RBP7.14□□□□□ -1.27
RTN3-202ENST00000339997 KIR3DS1Q14943 382 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 TMEM155Q4W5P6 130 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 ZNF474Q6S9Z5 364 aaPredicted RBP7.14□□□□□ -1.27
RTN3-202ENST00000339997 EEF1AKMT3Q96AZ1 226 aa7.14□□□□□ -1.27
RTN3-202ENST00000339997 IGKV1-6A0A0C4DH72 117 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 TMEM14EPQ6UXP3 125 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 TMEM219Q86XT9 240 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 C17orf100A8MU93 164 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 IQCF6A8MYZ5 107 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 YPEL1O60688 119 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 IGKCP01834 107 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 IFI27P40305 119 aaPredicted RBP7.13□□□□□ -1.27
RTN3-202ENST00000339997 NRN1LQ496H8 165 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 OR10J3Q5JRS4 329 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 ZNF562Q6V9R5 426 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 YPEL2Q96QA6 119 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 HIVEP3Q5T1R4 2406 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 MUC6Q6W4X9 2439 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 A0A087WX48 190 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 F2Z2F3 143 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 PSCAO43653 123 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 NDUFA2O43678 99 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 PRCDQ00LT1 54 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 S100A7L2Q5SY68 101 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 ASCL4Q6XD76 172 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms