RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 ZFAND5O76080 213 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 RBMY1DP0C7P1 496 aaKnown RBP3.31□□□□□ -1.88
NEDD4-201ENST00000338963 RBMY1A1P0DJD3 496 aaKnown RBP3.31□□□□□ -1.88
NEDD4-201ENST00000338963 RBMY1CP0DJD4 496 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 RBMY1FQ15415 496 aaKnown RBP3.31□□□□□ -1.88
NEDD4-201ENST00000338963 C2orf83Q53S99 150 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 TSACCQ96A04 125 aaPredicted RBP3.31□□□□□ -1.88
NEDD4-201ENST00000338963 TRBV30A0A0K0K1B3 111 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 STATHP02808 62 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 CDAP32320 146 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 FHL3Q13643 280 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 C4orf26Q17RF5 130 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 LYZL4Q96KX0 146 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 PLA2G2FQ9BZM2 168 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 SIT1Q9Y3P8 196 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 LGALS3P17931 250 aaKnown RBP3.31□□□□□ -1.88
NEDD4-201ENST00000338963 SSR4P51571 173 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 CCL11P51671 97 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 ZNF816Q0VGE8 651 aaPredicted RBP3.31□□□□□ -1.88
NEDD4-201ENST00000338963 C1orf158Q8N1D5 194 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 METTL26Q96S19 204 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 WDR90Q96KV7 1748 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 hADV29S1A0JD25 119 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 D6R8Y8 96 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 J3QT63 122 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 TDHQ8IZJ6 230 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 DKK2Q9UBU2 259 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 CYB5D2Q8WUJ1 264 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 PHIPQ8WWQ0 1821 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 F8VRH5 84 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 GFRA3O60609 400 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 Q6JHZ5 121 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 LYPD1Q8N2G4 141 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 POM121L12Q8N7R1 296 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 SRSF12Q8WXF0 261 aaKnown RBP3.3□□□□□ -1.88
NEDD4-201ENST00000338963 SCNM1Q9BWG6 230 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 K7EM74 188 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 K7ESM1 405 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 NDUFC1O43677 76 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 PMAIP1Q13794 54 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 LAGE3Q14657 143 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 Q6ZQT7 251 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 Q6ZT83 130 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 C7orf69Q9H7B7 122 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 SBF2Q86WG5 1849 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 LOC285556D6RIA3 1793 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 SIP14410 1827 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 WISP2O76076 250 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 LINC00477Q96M19 166 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 WNT10BO00744 389 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 WFDC5Q8TCV5 224 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 LTBP3Q9NS15 1303 aa3.3□□□□□ -1.88
NEDD4-201ENST00000338963 ERHP84090 104 aaKnown RBP3.29□□□□□ -1.88
NEDD4-201ENST00000338963 EIF4EBP1Q13541 118 aaPredicted RBP3.29□□□□□ -1.88
NEDD4-201ENST00000338963 ZNF497Q6ZNH5 498 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 Q6ZR03 302 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 TMEM89A2RUT3 159 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 C11orf53Q8IXP5 236 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 Q8N7P7 452 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 TMEM75Q8N9X5 138 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 NUP37Q8NFH4 326 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 FAM168AQ92567 244 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 HHLA3Q9XRX5 114 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 IGKV1-6A0A0C4DH72 117 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 IGKV1-12A0A0C4DH73 117 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 H0YIG0 161 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 IGKV1D-12P01611 117 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 Q5XG85 94 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 C18orf15Q96N68 181 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 ZNF138P52744 262 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 FSCN3Q9NQT6 498 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 HCSTQ9UBK5 93 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 ZNF638Q14966 1978 aaKnown RBP3.29□□□□□ -1.88
NEDD4-201ENST00000338963 TRAV40A0A0B4J280 105 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 A0A0G2JNJ9 132 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.29□□□□□ -1.88
NEDD4-201ENST00000338963 IGHG2P01859 326 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 LINC00336Q6ZUF6 198 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 C5orf38Q86SI9 138 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 MBD3L2Q8NHZ7 208 aaPredicted RBP3.29□□□□□ -1.88
NEDD4-201ENST00000338963 Q9UFV3 132 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 C15orf61A6NNL5 157 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 MRPS12O15235 138 aaKnown RBP3.29□□□□□ -1.88
NEDD4-201ENST00000338963 TIRAPP58753 221 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 RFESDQ8TAC1 157 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 ITLN1Q8WWA0 313 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 BEX4Q9NWD9 120 aaPredicted RBP3.29□□□□□ -1.88
NEDD4-201ENST00000338963 RNF181Q9P0P0 153 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 TMEM14CQ9P0S9 112 aa3.29□□□□□ -1.88
NEDD4-201ENST00000338963 TRAV3A0A0B4J244 114 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 TM4SF5O14894 197 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 B4GALT1P15291 398 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 CD52P31358 61 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 MYCNOSP40205 109 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 NNATQ16517 81 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 LOC389332A0A1B0GUA5 103 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 UPK2O00526 184 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 CD69Q07108 199 aa3.28□□□□□ -1.88
NEDD4-201ENST00000338963 KRTAP27-1Q3LI81 207 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms