RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 SRSF7Q16629 238 aaKnown RBP eCLIP13.15□□□□□ -0.3
NPHP3-201ENST00000337331 PRELID3AQ96N28 172 aa13.15□□□□□ -0.3
NPHP3-201ENST00000337331 Q9H3A6 140 aa13.15□□□□□ -0.3
NPHP3-201ENST00000337331 NLRC5Q86WI3 1866 aa13.15□□□□□ -0.3
NPHP3-201ENST00000337331 TRAV8-2A0A0B4J237 113 aa13.15□□□□□ -0.3
NPHP3-201ENST00000337331 PRSS2P07478 247 aa13.15□□□□□ -0.3
NPHP3-201ENST00000337331 DYSFO75923 2080 aa13.15□□□□□ -0.3
NPHP3-201ENST00000337331 ATP5G2Q06055 141 aa13.15□□□□□ -0.3
NPHP3-201ENST00000337331 PRB4P10163 310 aaPredicted RBP13.14□□□□□ -0.31
NPHP3-201ENST00000337331 C10orf55Q5SWW7 151 aa13.14□□□□□ -0.31
NPHP3-201ENST00000337331 PRCDQ00LT1 54 aa13.14□□□□□ -0.31
NPHP3-201ENST00000337331 ODF3L1Q8IXM7 274 aa13.14□□□□□ -0.31
NPHP3-201ENST00000337331 TMEM238LA0A1B0GVL6 79 aa13.14□□□□□ -0.31
NPHP3-201ENST00000337331 A6NJY4 79 aa13.14□□□□□ -0.31
NPHP3-201ENST00000337331 C15orf62A8K5M9 175 aa13.14□□□□□ -0.31
NPHP3-201ENST00000337331 K7ERJ3 54 aa13.14□□□□□ -0.31
NPHP3-201ENST00000337331 LYNX1G3V0Z9 82 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 LYNX1P0DP58 116 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 FAM106AQ4KMX7 169 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 FAM74A4Q5TZK3 123 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 VGLL1Q99990 258 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 TICRRQ7Z2Z1 1910 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 ATP5J2P56134 94 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 ERVK11-1P61568 191 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 PPP1R27Q86WC6 154 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 FAM168AQ92567 244 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 METRNQ9UJH8 293 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 CACNA1AO00555 2505 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 KIF26AQ9ULI4 1882 aaPredicted RBP13.13□□□□□ -0.31
NPHP3-201ENST00000337331 IGKV3-20P01619 116 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 DLX6P56179 175 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 FAM53AQ6NSI3 398 aaPredicted RBP13.13□□□□□ -0.31
NPHP3-201ENST00000337331 RASL11AQ6T310 242 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 SSC4DQ8WTU2 575 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 EEF1AKMT3Q96AZ1 226 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 IFI27L1Q96BM0 104 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 FOXC2Q99958 501 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 C11orf1Q9H5F2 150 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 COL4A6Q14031 1691 aa13.13□□□□□ -0.31
NPHP3-201ENST00000337331 M0R381 172 aa13.12□□□□□ -0.31
NPHP3-201ENST00000337331 WFDC2Q14508 124 aa13.12□□□□□ -0.31
NPHP3-201ENST00000337331 RPUSD1Q9UJJ7 312 aaKnown RBP13.12□□□□□ -0.31
NPHP3-201ENST00000337331 CD59P13987 128 aa13.12□□□□□ -0.31
NPHP3-201ENST00000337331 B3GALT5-AS1P59052 145 aa13.12□□□□□ -0.31
NPHP3-201ENST00000337331 BOD1L2Q8IYS8 172 aa13.12□□□□□ -0.31
NPHP3-201ENST00000337331 KIAA1549Q9HCM3 1950 aa13.12□□□□□ -0.31
NPHP3-201ENST00000337331 IGHV1-46P01743 117 aa13.11□□□□□ -0.31
NPHP3-201ENST00000337331 EPDR1Q9UM22 224 aa13.11□□□□□ -0.31
NPHP3-201ENST00000337331 CRXO43186 299 aaPredicted RBP13.11□□□□□ -0.31
NPHP3-201ENST00000337331 TRGV3P03979 118 aa13.11□□□□□ -0.31
NPHP3-201ENST00000337331 PRTN3P24158 256 aa13.11□□□□□ -0.31
NPHP3-201ENST00000337331 ATP5L2Q7Z4Y8 100 aa13.11□□□□□ -0.31
NPHP3-201ENST00000337331 TMEM133Q9H2Q1 129 aa13.11□□□□□ -0.31
NPHP3-201ENST00000337331 MED12LQ86YW9 2145 aa13.11□□□□□ -0.31
NPHP3-201ENST00000337331 CIARTQ8N365 385 aaPredicted RBP13.11□□□□□ -0.31
NPHP3-201ENST00000337331 FMC1Q96HJ9 113 aa13.11□□□□□ -0.31
NPHP3-201ENST00000337331 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.11□□□□□ -0.31
NPHP3-201ENST00000337331 TCRBV4S1A1TA0A5B7 111 aa13.11□□□□□ -0.31
NPHP3-201ENST00000337331 GTSCR1Q86UQ5 136 aa13.11□□□□□ -0.31
NPHP3-201ENST00000337331 PLSCR4Q9NRQ2 329 aa13.11□□□□□ -0.31
NPHP3-201ENST00000337331 A0A0C4DFX4 3053 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 OR11H12B2RN74 326 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 SPATA12Q7Z6I5 190 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 OR11H1Q8NG94 326 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 OR11H2Q8NH07 326 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 DDB2Q92466 427 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 ZGRF1Q86YA3 2104 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 TRAV3A0A0B4J244 114 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 COL4A3Q01955 1670 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 IGHV3OR16-12A0A075B7B8 117 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 NPIPB6E9PJ23 425 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 F8W1H4 67 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 GAGE5Q13069 117 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 GAGE6Q13070 117 aa13.1□□□□□ -0.31
NPHP3-201ENST00000337331 NCOA6Q14686 2063 aaPredicted RBP13.1□□□□□ -0.31
NPHP3-201ENST00000337331 DENND4CQ5VZ89 1909 aa13.09□□□□□ -0.31
NPHP3-201ENST00000337331 LINC00473A8K010 186 aa13.09□□□□□ -0.31
NPHP3-201ENST00000337331 YLPM1P49750 1951 aaKnown RBP13.09□□□□□ -0.31
NPHP3-201ENST00000337331 ZNF106Q9H2Y7 1883 aaKnown RBP13.09□□□□□ -0.31
NPHP3-201ENST00000337331 LINC00310P59036 64 aa13.09□□□□□ -0.31
NPHP3-201ENST00000337331 HBDP02042 147 aa13.09□□□□□ -0.31
NPHP3-201ENST00000337331 HERV-K104P63124 156 aa13.09□□□□□ -0.31
NPHP3-201ENST00000337331 FAM159AQ6UWV7 190 aa13.09□□□□□ -0.31
NPHP3-201ENST00000337331 ORMDL3Q8N138 153 aa13.09□□□□□ -0.31
NPHP3-201ENST00000337331 Q6P435 159 aa13.09□□□□□ -0.31
NPHP3-201ENST00000337331 FOXL2NBQ6ZUU3 175 aa13.09□□□□□ -0.31
NPHP3-201ENST00000337331 CD177Q8N6Q3 437 aa13.09□□□□□ -0.31
NPHP3-201ENST00000337331 KIR2DL4Q99706 377 aa13.09□□□□□ -0.31
NPHP3-201ENST00000337331 RAXQ9Y2V3 346 aa13.09□□□□□ -0.31
NPHP3-201ENST00000337331 RNASE6Q93091 150 aaKnown RBP13.08□□□□□ -0.32
NPHP3-201ENST00000337331 FAM90A9PA6NNJ1 464 aa13.08□□□□□ -0.32
NPHP3-201ENST00000337331 KLRB1Q12918 225 aa13.08□□□□□ -0.32
NPHP3-201ENST00000337331 RNF125Q96EQ8 232 aa13.08□□□□□ -0.32
NPHP3-201ENST00000337331 COQ2Q96H96 371 aa13.08□□□□□ -0.32
NPHP3-201ENST00000337331 NBR2O15453 112 aa13.08□□□□□ -0.32
NPHP3-201ENST00000337331 ASCL4Q6XD76 172 aa13.08□□□□□ -0.32
NPHP3-201ENST00000337331 CHAC1Q9BUX1 264 aa13.08□□□□□ -0.32
NPHP3-201ENST00000337331 SCRT2Q9NQ03 307 aa13.08□□□□□ -0.32
NPHP3-201ENST00000337331 BEX4Q9NWD9 120 aaPredicted RBP13.08□□□□□ -0.32
NPHP3-201ENST00000337331 TRBV6-6A0A0A6YYG2 114 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms