RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 TMEM155Q4W5P6 130 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 A0A0G2JRQ6 117 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 PAX1P15863 534 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 PROK2Q9HC23 129 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 GOLGB1Q14789 3259 aaKnown RBP8.31□□□□□ -1.08
CHD3-201ENST00000330494 A0A0U1RRA0 63 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 KLHL30-AS1Q8NEE0 82 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 JMJD8Q96S16 334 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 FCN3O75636 299 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 PRTN3P24158 256 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 ERVK11-1P61568 191 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 FHL1Q13642 323 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 GAGE13Q4V321 117 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 ACTL10Q5JWF8 245 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 ZNF503-AS2A6NEH8 195 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 IGHG3P01860 377 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 ASCL4Q6XD76 172 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 LHFPL1Q86WI0 220 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 UBE2E2Q96LR5 201 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 AMBPP02760 352 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 NTF4P34130 210 aa8.31□□□□□ -1.08
CHD3-201ENST00000330494 B4DSR2 109 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 QRFPP83859 136 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 TMEM42Q69YG0 159 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 C1orf122Q6ZSJ8 110 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 NCR2O95944 276 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 ST20Q9HBF5 79 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 PCNX2A6NKB5 2137 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 TRAV21A0A0B4J279 112 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 HOXA3O43365 443 aaPredicted RBP8.3□□□□□ -1.08
CHD3-201ENST00000330494 TNFSF13O75888 250 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 MALP21145 153 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 SLC50A1Q9BRV3 221 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 CXCL1P09341 107 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 IL17RELQ6ZVW7 336 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 ABCA4P78363 2273 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 TRAV8-1A0A0A6YYK1 113 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 A0A1B0GW15 77 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 PIP4P2Q8N4L2 257 aa8.3□□□□□ -1.08
CHD3-201ENST00000330494 RSPO3Q9BXY4 272 aaPredicted RBP8.29□□□□□ -1.08
CHD3-201ENST00000330494 EDA2RQ9HAV5 297 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 WDR83OSQ9Y284 106 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 SIGLEC9Q9Y336 463 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 ABCA1O95477 2261 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 COLCA2A8K830 154 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 PAX2Q02962 417 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 C5orf64Q2M2E5 130 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 DYSFO75923 2080 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.29□□□□□ -1.08
CHD3-201ENST00000330494 UBE2V1Q13404 147 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 TNFRSF14Q92956 283 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 ZNF479Q96JC4 524 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 A8MWV9 139 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 NPC2P61916 151 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 IGFBPL1Q8WX77 278 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 Q96MF0 132 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 DSCR9P59020 149 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 TMEM249Q2WGJ8 235 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 COX11Q9Y6N1 276 aa8.29□□□□□ -1.08
CHD3-201ENST00000330494 PYY3Q5JQD4 70 aa8.28□□□□□ -1.08
CHD3-201ENST00000330494 ATP5LO75964 103 aa8.28□□□□□ -1.08
CHD3-201ENST00000330494 ERCC8Q13216 396 aa8.28□□□□□ -1.08
CHD3-201ENST00000330494 DMRTC2Q8IXT2 367 aaPredicted RBP8.28□□□□□ -1.08
CHD3-201ENST00000330494 SHANK1Q9Y566 2161 aa8.28□□□□□ -1.08
CHD3-201ENST00000330494 FOXL1Q12952 345 aa8.28□□□□□ -1.08
CHD3-201ENST00000330494 NMSQ5H8A3 153 aa8.28□□□□□ -1.08
CHD3-201ENST00000330494 CYTL1Q9NRR1 136 aa8.28□□□□□ -1.08
CHD3-201ENST00000330494 EREGO14944 169 aa8.28□□□□□ -1.08
CHD3-201ENST00000330494 OCIAD2Q56VL3 154 aa8.28□□□□□ -1.08
CHD3-201ENST00000330494 C1orf194Q5T5A4 169 aa8.28□□□□□ -1.08
CHD3-201ENST00000330494 Q6ZRM9 215 aa8.28□□□□□ -1.08
CHD3-201ENST00000330494 PAPPA-AS1Q5QFB9 102 aa8.27□□□□□ -1.08
CHD3-201ENST00000330494 SRRM4A7MD48 611 aaKnown RBP8.27□□□□□ -1.09
CHD3-201ENST00000330494 K7EM74 188 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 SPINK8P0C7L1 97 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 MPZP25189 248 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 LINC01356Q8N9X3 169 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 NCKAP5O14513 1909 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 A0A1W2PRE2 83 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 DUSP14O95147 198 aaKnown RBP8.27□□□□□ -1.09
CHD3-201ENST00000330494 SSC4DQ8WTU2 575 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 TCRAP04437 139 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 MINOS1Q5TGZ0 78 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 PRSS33Q8NF86 280 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 MINOS1-NBL1R4GNA1 71 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 FAM90A9PA6NNJ1 464 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 TDGF1P3P51864 188 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 AGMATQ9BSE5 352 aa8.27□□□□□ -1.09
CHD3-201ENST00000330494 GAGE12BA1L429 117 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 SYNJ2BPP57105 145 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 RPP25LQ8N5L8 163 aaKnown RBP8.26□□□□□ -1.09
CHD3-201ENST00000330494 A0A1B0GWJ7 208 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 M0R1W7 72 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 SEC11AP67812 179 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 RCHY1Q96PM5 261 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 CD28P10747 220 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 CFAP161Q6P656 301 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 LINC00479Q96M42 142 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 TRBV7-9A0A0J9YWB2 115 aa8.26□□□□□ -1.09
CHD3-201ENST00000330494 PLA2G2CQ5R387 149 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms