RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 NPIPB5A8MRT5 1133 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 GFRA4Q9GZZ7 299 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 Q9UFV3 132 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 TMEM238LA0A1B0GVL6 79 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 A6NJY4 79 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 H3BUT2 72 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 CT83Q5H943 113 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 LDLRAD2Q5SZI1 272 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 PF4V1P10720 104 aa11.9□□□□□ -0.51
TCOF1-201ENST00000323668 SEC11AP67812 179 aa11.9□□□□□ -0.51
TCOF1-201ENST00000323668 Q86TA4 180 aa11.9□□□□□ -0.51
TCOF1-201ENST00000323668 NEU4Q8WWR8 484 aaPredicted RBP11.9□□□□□ -0.51
TCOF1-201ENST00000323668 ZNF492Q9P255 531 aa11.9□□□□□ -0.51
TCOF1-201ENST00000323668 FAM231BA6NCW3 169 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 OR11H12B2RN74 326 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 BUB1B-PAK6H3BSN5 160 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 NPSP0C0P6 89 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 P0C879 139 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 KLF17Q5JT82 389 aaPredicted RBP11.89□□□□□ -0.51
TCOF1-201ENST00000323668 OR11H1Q8NG94 326 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 OR11H2Q8NH07 326 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 LYPD1Q8N2G4 141 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 ASCL2Q99929 193 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 PTPRSQ13332 1948 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 D6R8Y8 96 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 CIDEAO60543 219 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 AMMECR1LQ6DCA0 310 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 DMRTC2Q8IXT2 367 aaPredicted RBP11.89□□□□□ -0.51
TCOF1-201ENST00000323668 SPRY4Q9C004 299 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.89□□□□□ -0.519e-7■■■■□ 22.6
TCOF1-201ENST00000323668 LEPP41159 167 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 LYZL1Q6UWQ5 148 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 OR4X2Q8NGF9 303 aa11.89□□□□□ -0.51
TCOF1-201ENST00000323668 SH2D7A6NKC9 451 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-201ENST00000323668 M0R3E3 92 aa11.88□□□□□ -0.51
TCOF1-201ENST00000323668 ID1P41134 155 aa11.88□□□□□ -0.51
TCOF1-201ENST00000323668 SPCS1Q9Y6A9 102 aa11.88□□□□□ -0.51
TCOF1-201ENST00000323668 NUP210LQ5VU65 1888 aa11.88□□□□□ -0.51
TCOF1-201ENST00000323668 TMEM155Q4W5P6 130 aa11.88□□□□□ -0.51
TCOF1-201ENST00000323668 TEX36Q5VZQ5 186 aa11.88□□□□□ -0.51
TCOF1-201ENST00000323668 MCRIP2Q9BUT9 160 aaKnown RBP11.88□□□□□ -0.51
TCOF1-201ENST00000323668 NXT2Q9NPJ8 142 aaKnown RBP11.88□□□□□ -0.51
TCOF1-201ENST00000323668 PSMB2P49721 201 aa11.88□□□□□ -0.51
TCOF1-201ENST00000323668 DLX1P56177 255 aa11.88□□□□□ -0.51
TCOF1-201ENST00000323668 ZNF672Q499Z4 452 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-201ENST00000323668 COX11Q9Y6N1 276 aa11.88□□□□□ -0.51
TCOF1-201ENST00000323668 PSG3Q16557 428 aa11.88□□□□□ -0.51
TCOF1-201ENST00000323668 TTC9CQ8N5M4 171 aa11.88□□□□□ -0.51
TCOF1-201ENST00000323668 PLA2G2CQ5R387 149 aa11.87□□□□□ -0.51
TCOF1-201ENST00000323668 FAM168AQ92567 244 aa11.87□□□□□ -0.51
TCOF1-201ENST00000323668 A0A087X0K7 114 aa11.87□□□□□ -0.51
TCOF1-201ENST00000323668 PLA2G5P39877 138 aa11.87□□□□□ -0.51
TCOF1-201ENST00000323668 CLEC19AQ6UXS0 136 aa11.87□□□□□ -0.51
TCOF1-201ENST00000323668 DDB2Q92466 427 aa11.87□□□□□ -0.51
TCOF1-201ENST00000323668 FNDC4Q9H6D8 234 aaPredicted RBP11.87□□□□□ -0.51
TCOF1-201ENST00000323668 M0R381 172 aa11.87□□□□□ -0.51
TCOF1-201ENST00000323668 FXYD5Q96DB9 178 aa11.87□□□□□ -0.51
TCOF1-201ENST00000323668 VKORC1Q9BQB6 163 aa11.87□□□□□ -0.51
TCOF1-201ENST00000323668 IGKV2-40A0A087WW87 121 aaPredicted RBP11.86□□□□□ -0.51
TCOF1-201ENST00000323668 LOC107984156A0A0G2JMH3 177 aa11.86□□□□□ -0.51
TCOF1-201ENST00000323668 IGKV2D-40P01614 121 aaPredicted RBP11.86□□□□□ -0.51
TCOF1-201ENST00000323668 ARMS2P0C7Q2 107 aa11.86□□□□□ -0.51
TCOF1-201ENST00000323668 IGLL1P15814 213 aa11.86□□□□□ -0.51
TCOF1-201ENST00000323668 ASPHD1Q5U4P2 390 aa11.86□□□□□ -0.51
TCOF1-201ENST00000323668 ARL17AQ8IVW1 177 aa11.86□□□□□ -0.51
TCOF1-201ENST00000323668 SLC50A1Q9BRV3 221 aa11.86□□□□□ -0.51
TCOF1-201ENST00000323668 PPIFP30405 207 aaKnown RBP11.86□□□□□ -0.51
TCOF1-201ENST00000323668 TDRG1Q3Y452 100 aa11.86□□□□□ -0.51
TCOF1-201ENST00000323668 LINC00311Q8N616 119 aa11.86□□□□□ -0.51
TCOF1-201ENST00000323668 GAGE1Q13065 139 aa11.86□□□□□ -0.51
TCOF1-201ENST00000323668 BRWD1-AS2P59051 145 aa11.86□□□□□ -0.51
TCOF1-201ENST00000323668 SHANK2-AS3Q9BTD1 123 aa11.86□□□□□ -0.51
TCOF1-201ENST00000323668 GUSBP1Q15486 140 aa11.85□□□□□ -0.51
TCOF1-201ENST00000323668 LHBP01229 141 aa11.85□□□□□ -0.51
TCOF1-201ENST00000323668 OR2K2Q8NGT1 345 aa11.85□□□□□ -0.51
TCOF1-201ENST00000323668 HSD52Q0P140 79 aa11.85□□□□□ -0.51
TCOF1-201ENST00000323668 OR9G4Q8NGQ1 327 aa11.85□□□□□ -0.51
TCOF1-201ENST00000323668 FAM215AQ9Y5M1 114 aa11.85□□□□□ -0.51
TCOF1-201ENST00000323668 CHD3Q12873 2000 aaKnown RBP11.85□□□□□ -0.51
TCOF1-201ENST00000323668 LOXP28300 417 aaPredicted RBP11.85□□□□□ -0.51
TCOF1-201ENST00000323668 C5orf64Q2M2E5 130 aa11.85□□□□□ -0.51
TCOF1-201ENST00000323668 THAP8Q8NA92 274 aa11.85□□□□□ -0.51
TCOF1-201ENST00000323668 OR1N2Q8NGR9 330 aa11.85□□□□□ -0.51
TCOF1-201ENST00000323668 TPSG1Q9NRR2 321 aa11.85□□□□□ -0.51
TCOF1-201ENST00000323668 TRGV3P03979 118 aa11.84□□□□□ -0.51
TCOF1-201ENST00000323668 HTN1P15515 57 aa11.84□□□□□ -0.51
TCOF1-201ENST00000323668 CEACAM8P31997 349 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-201ENST00000323668 RHOGP84095 191 aa11.84□□□□□ -0.51
TCOF1-201ENST00000323668 DIAPH2-AS1Q14236 149 aa11.84□□□□□ -0.51
TCOF1-201ENST00000323668 SPRNQ5BIV9 151 aa11.84□□□□□ -0.51
TCOF1-201ENST00000323668 NCR2O95944 276 aa11.84□□□□□ -0.51
TCOF1-201ENST00000323668 TDGF1P13385 188 aa11.84□□□□□ -0.51
TCOF1-201ENST00000323668 JKAMPQ9P055 326 aa11.84□□□□□ -0.51
TCOF1-201ENST00000323668 PROP1O75360 226 aa11.84□□□□□ -0.51
TCOF1-201ENST00000323668 CNTFRP26992 372 aa11.84□□□□□ -0.51
TCOF1-201ENST00000323668 STPG4Q8N801 248 aa11.84□□□□□ -0.51
TCOF1-201ENST00000323668 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-201ENST00000323668 SCGB3A1Q96QR1 104 aa11.84□□□□□ -0.51
TCOF1-201ENST00000323668 SRSF8Q9BRL6 282 aaKnown RBP11.84□□□□□ -0.51
TCOF1-201ENST00000323668 AMN1Q8IY45 258 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 213.6 ms