RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 PRR20DP86480 221 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 PRR20BP86481 221 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 PRR20AP86496 221 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 PSG3Q16557 428 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 IGHV3-49A0A0A0MS15 119 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 KLF17Q5JT82 389 aaPredicted RBP15.7■□□□□ 0.1
USP48-201ENST00000308271 TMEM200BQ69YZ2 307 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 FAM74A4Q5TZK3 123 aa15.69■□□□□ 0.1
USP48-201ENST00000308271 ZCCHC24Q8N2G6 241 aaKnown RBP15.69■□□□□ 0.1
USP48-201ENST00000308271 GAFA1Q96PS6 74 aa15.69■□□□□ 0.1
USP48-201ENST00000308271 CIRBPQ14011 172 aaKnown RBP15.69■□□□□ 0.1
USP48-201ENST00000308271 IGHV3-66A0A0C4DH42 116 aa15.69■□□□□ 0.1
USP48-201ENST00000308271 ZNF503-AS2A6NEH8 195 aa15.69■□□□□ 0.1
USP48-201ENST00000308271 TMEM262E9PQX1 116 aa15.69■□□□□ 0.1
USP48-201ENST00000308271 ZNF56Q15929 161 aa15.69■□□□□ 0.1
USP48-201ENST00000308271 FAM169BQ8N8A8 192 aa15.69■□□□□ 0.1
USP48-201ENST00000308271 FAM57AQ8TBR7 257 aa15.69■□□□□ 0.1
USP48-201ENST00000308271 UBTD1Q9HAC8 227 aa15.69■□□□□ 0.1
USP48-201ENST00000308271 IFI27P40305 119 aaPredicted RBP15.68■□□□□ 0.1
USP48-201ENST00000308271 NCOR1P1Q9H4R4 102 aa15.68■□□□□ 0.1
USP48-201ENST00000308271 ARMS2P0C7Q2 107 aa15.68■□□□□ 0.1
USP48-201ENST00000308271 ABCA1O95477 2261 aa15.68■□□□□ 0.1
USP48-201ENST00000308271 PPIFP30405 207 aaKnown RBP15.68■□□□□ 0.1
USP48-201ENST00000308271 ADIPOQQ15848 244 aa15.68■□□□□ 0.1
USP48-201ENST00000308271 FAM71F2Q6NXP2 309 aa15.68■□□□□ 0.1
USP48-201ENST00000308271 ATRXP46100 2492 aa15.68■□□□□ 0.1
USP48-201ENST00000308271 IGHV1-24A0A0C4DH33 117 aa15.68■□□□□ 0.1
USP48-201ENST00000308271 CHTOPQ9Y3Y2 248 aaKnown RBP15.68■□□□□ 0.1
USP48-201ENST00000308271 LAGE3Q14657 143 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 COX8AP10176 69 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 COPS9Q8WXC6 57 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 AMN1Q8IY45 258 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 TMEM105Q8N8V8 129 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 GTSF1LQ9H1H1 148 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 NDUFA4L2Q9NRX3 87 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 ZFHX2Q9C0A1 2572 aaPredicted RBP15.67■□□□□ 0.1
USP48-201ENST00000308271 C9orf118A6NHY6 69 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 ZNF815PA8K554 130 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 C15orf65H3BRN8 121 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 RNFT1Q5M7Z0 435 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 ZC2HC1BQ5TFG8 222 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 WIPF2Q8TF74 440 aaPredicted RBP15.67■□□□□ 0.1
USP48-201ENST00000308271 RNF5Q99942 180 aa15.67■□□□□ 0.1
USP48-201ENST00000308271 IGHV1-8P0DP01 117 aa15.66■□□□□ 0.1
USP48-201ENST00000308271 EMP1P54849 157 aa15.66■□□□□ 0.1
USP48-201ENST00000308271 FAM106AQ4KMX7 169 aa15.66■□□□□ 0.1
USP48-201ENST00000308271 FXYD7P58549 80 aa15.66■□□□□ 0.1
USP48-201ENST00000308271 TDRG1Q3Y452 100 aa15.66■□□□□ 0.1
USP48-201ENST00000308271 SFTA2Q6UW10 78 aa15.66■□□□□ 0.1
USP48-201ENST00000308271 IGKV2-40A0A087WW87 121 aaPredicted RBP15.66■□□□□ 0.1
USP48-201ENST00000308271 IGLC7A0M8Q6 106 aa15.66■□□□□ 0.1
USP48-201ENST00000308271 SH2D1AO60880 128 aa15.66■□□□□ 0.1
USP48-201ENST00000308271 IGKV2D-40P01614 121 aaPredicted RBP15.66■□□□□ 0.1
USP48-201ENST00000308271 CDKN1BP46527 198 aa15.66■□□□□ 0.1
USP48-201ENST00000308271 BVES-AS1Q5T3Y7 98 aa15.66■□□□□ 0.1
USP48-201ENST00000308271 CYSLTR1Q9Y271 337 aa15.66■□□□□ 0.1
USP48-201ENST00000308271 NDUFS8O00217 210 aa15.65■□□□□ 0.1
USP48-201ENST00000308271 TIMM23O14925 209 aa15.65■□□□□ 0.1
USP48-201ENST00000308271 KRTAP27-1Q3LI81 207 aa15.65■□□□□ 0.1
USP48-201ENST00000308271 A8MWV9 139 aa15.65■□□□□ 0.1
USP48-201ENST00000308271 TEX29Q8N6K0 151 aa15.65■□□□□ 0.1
USP48-201ENST00000308271 LSM4Q9Y4Z0 139 aaKnown RBP15.65■□□□□ 0.1
USP48-201ENST00000308271 PKDREJQ9NTG1 2253 aa15.65■□□□□ 0.1
USP48-201ENST00000308271 TRAV8-2A0A0B4J237 113 aa15.64■□□□□ 0.09
USP48-201ENST00000308271 CHAC1Q9BUX1 264 aa15.64■□□□□ 0.09
USP48-201ENST00000308271 LINC01549A6NIU2 74 aa15.64■□□□□ 0.09
USP48-201ENST00000308271 KIR3DL3Q8N743 410 aa15.64■□□□□ 0.09
USP48-201ENST00000308271 SIGLEC9Q9Y336 463 aa15.64■□□□□ 0.09
USP48-201ENST00000308271 DOCK10Q96BY6 2186 aa15.64■□□□□ 0.09
USP48-201ENST00000308271 A0A1W2PPI3 338 aa15.64■□□□□ 0.09
USP48-201ENST00000308271 PLNP26678 52 aa15.64■□□□□ 0.09
USP48-201ENST00000308271 KLF5Q13887 457 aaPredicted RBP15.64■□□□□ 0.09
USP48-201ENST00000308271 CLEC19AQ6UXS0 136 aa15.64■□□□□ 0.09
USP48-201ENST00000308271 FGF23Q9GZV9 251 aaPredicted RBP15.64■□□□□ 0.09
USP48-201ENST00000308271 GEMIN7Q9H840 131 aaKnown RBP15.64■□□□□ 0.09
USP48-201ENST00000308271 K7EP13 123 aa15.63■□□□□ 0.09
USP48-201ENST00000308271 CCL25O15444 150 aa15.63■□□□□ 0.09
USP48-201ENST00000308271 PAX1P15863 534 aa15.63■□□□□ 0.09
USP48-201ENST00000308271 RNASE6Q93091 150 aaKnown RBP15.63■□□□□ 0.09
USP48-201ENST00000308271 NCOA6Q14686 2063 aaPredicted RBP15.63■□□□□ 0.09
USP48-201ENST00000308271 IGHV1-3A0A0C4DH29 117 aa15.63■□□□□ 0.09
USP48-201ENST00000308271 HAX1O00165 279 aa15.63■□□□□ 0.09
USP48-201ENST00000308271 PRB3Q04118 309 aaPredicted RBP15.63■□□□□ 0.09
USP48-201ENST00000308271 Q6ZR03 302 aa15.63■□□□□ 0.09
USP48-201ENST00000308271 TGFAP01135 160 aa15.63■□□□□ 0.09
USP48-201ENST00000308271 POU2AF1Q16633 256 aa15.63■□□□□ 0.09
USP48-201ENST00000308271 MAJINQ3KP22 176 aa15.63■□□□□ 0.09
USP48-201ENST00000308271 TICRRQ7Z2Z1 1910 aa15.63■□□□□ 0.09
USP48-201ENST00000308271 POLEQ07864 2286 aa15.62■□□□□ 0.09
USP48-201ENST00000308271 TRGV3P03979 118 aa15.62■□□□□ 0.09
USP48-201ENST00000308271 TMEM178BH3BS89 294 aa15.62■□□□□ 0.09
USP48-201ENST00000308271 ADAMTSL5Q6ZMM2 481 aa15.62■□□□□ 0.09
USP48-201ENST00000308271 TRAV21A0A0B4J279 112 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 H7C1H1 209 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 DKK1O94907 266 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 IGHG3P01860 377 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 PDE6HQ13956 83 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 YPEL4Q96NS1 127 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 ANAPC13Q9BS18 74 aa15.61■□□□□ 0.09
USP48-201ENST00000308271 SHANK2-AS3Q9BTD1 123 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms