RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 IFNA1P01562 189 aa16.05■□□□□ 0.16
SMCO4-201ENST00000298966 STAG3L2P0CL84 134 aa16.05■□□□□ 0.16
SMCO4-201ENST00000298966 STAG3L3P0CL85 134 aa16.05■□□□□ 0.16
SMCO4-201ENST00000298966 GATA2P23769 480 aaPredicted RBP16.05■□□□□ 0.16
SMCO4-201ENST00000298966 GPR183P32249 361 aa16.05■□□□□ 0.16
SMCO4-201ENST00000298966 CDX1P47902 265 aaPredicted RBP16.05■□□□□ 0.16
SMCO4-201ENST00000298966 PSMB3P49720 205 aa16.05■□□□□ 0.16
SMCO4-201ENST00000298966 FAM78BQ5VT40 261 aa16.05■□□□□ 0.16
SMCO4-201ENST00000298966 ZNF343Q6P1L6 599 aa16.05■□□□□ 0.16
SMCO4-201ENST00000298966 PQLC2Q6ZP29 291 aa16.05■□□□□ 0.16
SMCO4-201ENST00000298966 STXBP6Q8NFX7 210 aa16.05■□□□□ 0.16
SMCO4-201ENST00000298966 MYOZ3Q8TDC0 251 aa16.05■□□□□ 0.16
SMCO4-201ENST00000298966 ZMAT4Q9H898 229 aa16.05■□□□□ 0.16
SMCO4-201ENST00000298966 TREM1Q9NP99 234 aa16.05■□□□□ 0.16
SMCO4-201ENST00000298966 TECRQ9NZ01 308 aaKnown RBP16.05■□□□□ 0.16
SMCO4-201ENST00000298966 RBFOX3A6NFN3 312 aa16.04■□□□□ 0.16
SMCO4-201ENST00000298966 OR2T8A6NH00 312 aa16.04■□□□□ 0.16
SMCO4-201ENST00000298966 CLEC3BP05452 202 aa16.04■□□□□ 0.16
SMCO4-201ENST00000298966 FGF8P55075 233 aaPredicted RBP16.04■□□□□ 0.16
SMCO4-201ENST00000298966 SRSF3P84103 164 aaKnown RBP16.04■□□□□ 0.16
SMCO4-201ENST00000298966 KHDC3LQ587J8 217 aa16.04■□□□□ 0.16
SMCO4-201ENST00000298966 ZNF506Q5JVG8 444 aa16.04■□□□□ 0.16
SMCO4-201ENST00000298966 RNF125Q96EQ8 232 aa16.04■□□□□ 0.16
SMCO4-201ENST00000298966 TMEM218A2RU14 115 aa16.03■□□□□ 0.16
SMCO4-201ENST00000298966 C8orf88P0DMB2 117 aa16.03■□□□□ 0.16
SMCO4-201ENST00000298966 INSL3P51460 131 aa16.03■□□□□ 0.16
SMCO4-201ENST00000298966 CLEC19AQ6UXS0 136 aa16.03■□□□□ 0.16
SMCO4-201ENST00000298966 ZNF491Q8N8L2 437 aa16.03■□□□□ 0.16
SMCO4-201ENST00000298966 TMEM37Q8WXS4 190 aa16.03■□□□□ 0.16
SMCO4-201ENST00000298966 EIF5A2Q9GZV4 153 aaKnown RBP16.03■□□□□ 0.16
SMCO4-201ENST00000298966 MANBALQ9NQG1 85 aa16.03■□□□□ 0.16
SMCO4-201ENST00000298966 HIGD1AQ9Y241 93 aa16.03■□□□□ 0.16
SMCO4-201ENST00000298966 LOC102723971A0A1B0GUV8 181 aa16.02■□□□□ 0.16
SMCO4-201ENST00000298966 NDUFS6O75380 124 aaKnown RBP16.02■□□□□ 0.16
SMCO4-201ENST00000298966 OR1B1Q8NGR6 318 aa16.02■□□□□ 0.16
SMCO4-201ENST00000298966 UBE2E2Q96LR5 201 aa16.02■□□□□ 0.16
SMCO4-201ENST00000298966 LINC00052Q96N35 136 aa16.02■□□□□ 0.16
SMCO4-201ENST00000298966 KLK15Q9H2R5 256 aa16.02■□□□□ 0.16
SMCO4-201ENST00000298966 SEPSECSQ9HD40 501 aaKnown RBP16.02■□□□□ 0.16
SMCO4-201ENST00000298966 MRPL27Q9P0M9 148 aaKnown RBP16.02■□□□□ 0.16
SMCO4-201ENST00000298966 GNG13Q9P2W3 67 aa16.02■□□□□ 0.16
SMCO4-201ENST00000298966 S4R3C0 116 aa16.02■□□□□ 0.16
SMCO4-201ENST00000298966 STARD9Q9P2P6 4700 aa16.02■□□□□ 0.15
SMCO4-201ENST00000298966 BMPR1BO00238 502 aa16.01■□□□□ 0.15
SMCO4-201ENST00000298966 IGHV3-23P01764 117 aa16.01■□□□□ 0.15
SMCO4-201ENST00000298966 IL4P05112 153 aa16.01■□□□□ 0.15
SMCO4-201ENST00000298966 BCL2P10415 239 aa16.01■□□□□ 0.15
SMCO4-201ENST00000298966 ORM2P19652 201 aa16.01■□□□□ 0.15
SMCO4-201ENST00000298966 ADMP35318 185 aa16.01■□□□□ 0.15
SMCO4-201ENST00000298966 LYZP61626 148 aa16.01■□□□□ 0.15
SMCO4-201ENST00000298966 DEFA5Q01523 94 aa16.01■□□□□ 0.15
SMCO4-201ENST00000298966 NARS2Q96I59 477 aaKnown RBP16.01■□□□□ 0.15
SMCO4-201ENST00000298966 TMEM231Q9H6L2 316 aa16.01■□□□□ 0.15
SMCO4-201ENST00000298966 TMEM167BQ9NRX6 74 aa16.01■□□□□ 0.15
SMCO4-201ENST00000298966 ARL2-SNX15V9GYD0 113 aa16.01■□□□□ 0.15
SMCO4-201ENST00000298966 HMGB3O15347 200 aaKnown RBP16■□□□□ 0.15
SMCO4-201ENST00000298966 HSPB1P04792 205 aaKnown RBP16■□□□□ 0.15
SMCO4-201ENST00000298966 ARL3P36405 182 aa16■□□□□ 0.15
SMCO4-201ENST00000298966 ICAM4Q14773 271 aa16■□□□□ 0.15
SMCO4-201ENST00000298966 HAGHQ16775 308 aa16■□□□□ 0.15
SMCO4-201ENST00000298966 SPATA31B1PQ5VZV4 182 aa16■□□□□ 0.15
SMCO4-201ENST00000298966 PATE2Q6UY27 113 aa16■□□□□ 0.15
SMCO4-201ENST00000298966 LINC00305Q7Z4B0 112 aa16■□□□□ 0.15
SMCO4-201ENST00000298966 C4orf3Q8WVX3 66 aa16■□□□□ 0.15
SMCO4-201ENST00000298966 TXNDC17Q9BRA2 123 aa16■□□□□ 0.15
SMCO4-201ENST00000298966 CHRDL1Q9BU40 450 aa16■□□□□ 0.15
SMCO4-201ENST00000298966 FRMD6-AS1P0C7T7 363 aa15.99■□□□□ 0.15
SMCO4-201ENST00000298966 ARL14EPLP0DKL9 152 aa15.99■□□□□ 0.15
SMCO4-201ENST00000298966 FHL3Q13643 280 aa15.99■□□□□ 0.15
SMCO4-201ENST00000298966 C10orf91Q5T1B1 145 aa15.99■□□□□ 0.15
SMCO4-201ENST00000298966 MIR17HGQ75NE6 70 aa15.99■□□□□ 0.15
SMCO4-201ENST00000298966 TMEM190Q8WZ59 177 aa15.99■□□□□ 0.15
SMCO4-201ENST00000298966 DOK5Q9P104 306 aa15.99■□□□□ 0.15
SMCO4-201ENST00000298966 PEF1Q9UBV8 284 aaKnown RBP15.99■□□□□ 0.15
SMCO4-201ENST00000298966 VAX2Q9UIW0 290 aa15.99■□□□□ 0.15
SMCO4-201ENST00000298966 PUS1Q9Y606 427 aaKnown RBP eCLIP15.99■□□□□ 0.15
SMCO4-201ENST00000298966 CSMD3Q7Z407 3707 aa15.98■□□□□ 0.15
SMCO4-201ENST00000298966 C9JQL5 133 aa15.98■□□□□ 0.15
SMCO4-201ENST00000298966 NDUFA4O00483 81 aa15.98■□□□□ 0.15
SMCO4-201ENST00000298966 GGCTO75223 188 aaKnown RBP15.98■□□□□ 0.15
SMCO4-201ENST00000298966 EIF3GO75821 320 aaKnown RBP eCLIP15.98■□□□□ 0.15
SMCO4-201ENST00000298966 GCHFRP30047 84 aa15.98■□□□□ 0.15
SMCO4-201ENST00000298966 KIAA0141Q14154 515 aaPredicted RBP15.98■□□□□ 0.15
SMCO4-201ENST00000298966 OR11H1Q8NG94 326 aa15.98■□□□□ 0.15
SMCO4-201ENST00000298966 RARRES2Q99969 163 aa15.98■□□□□ 0.15
SMCO4-201ENST00000298966 SEC11CQ9BY50 192 aa15.98■□□□□ 0.15
SMCO4-201ENST00000298966 SLC35B3Q9H1N7 401 aa15.98■□□□□ 0.15
SMCO4-201ENST00000298966 GNB4Q9HAV0 340 aa15.98■□□□□ 0.15
SMCO4-201ENST00000298966 RABAC1Q9UI14 185 aa15.98■□□□□ 0.15
SMCO4-201ENST00000298966 LGALS1P09382 135 aaKnown RBP15.97■□□□□ 0.15
SMCO4-201ENST00000298966 SFTA3P0C7M3 94 aa15.97■□□□□ 0.15
SMCO4-201ENST00000298966 ADAMTSL5Q6ZMM2 481 aa15.97■□□□□ 0.15
SMCO4-201ENST00000298966 SUN5Q8TC36 379 aa15.97■□□□□ 0.15
SMCO4-201ENST00000298966 SHANK2-AS3Q9BTD1 123 aa15.97■□□□□ 0.15
SMCO4-201ENST00000298966 SLC25A39Q9BZJ4 359 aaPredicted RBP15.97■□□□□ 0.15
SMCO4-201ENST00000298966 TMPRSS5Q9H3S3 457 aa15.97■□□□□ 0.15
SMCO4-201ENST00000298966 CARHSP1Q9Y2V2 147 aaKnown RBP15.97■□□□□ 0.15
SMCO4-201ENST00000298966 H3BRN7 92 aa15.96■□□□□ 0.15
SMCO4-201ENST00000298966 TOMM20LQ6UXN7 152 aa15.96■□□□□ 0.15
SMCO4-201ENST00000298966 RXFP4Q8TDU9 374 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms