RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ATP5IP56385 69 aaPredicted RBP10.15□□□□□ -0.78
LIG1-201ENST00000263274 HBBP68871 147 aa10.15□□□□□ -0.78
LIG1-201ENST00000263274 MEF2CQ06413 473 aaPredicted RBP10.15□□□□□ -0.78
LIG1-201ENST00000263274 HES1Q14469 280 aa10.15□□□□□ -0.78
LIG1-201ENST00000263274 ZNF841Q6ZN19 808 aa10.15□□□□□ -0.78
LIG1-201ENST00000263274 LINC00173Q6ZV60 143 aa10.15□□□□□ -0.78
LIG1-201ENST00000263274 CTSZQ9UBR2 303 aa10.15□□□□□ -0.78
LIG1-201ENST00000263274 Q9UFV3 132 aa10.15□□□□□ -0.78
LIG1-201ENST00000263274 CGB1A6NKQ9 187 aa10.15□□□□□ -0.79
LIG1-201ENST00000263274 SNAI2O43623 268 aa10.15□□□□□ -0.79
LIG1-201ENST00000263274 HTR1DP28221 377 aa10.15□□□□□ -0.79
LIG1-201ENST00000263274 RPEQ96AT9 228 aa10.15□□□□□ -0.79
LIG1-201ENST00000263274 RPP21Q9H633 154 aaKnown RBP10.15□□□□□ -0.79
LIG1-201ENST00000263274 ANKHD1Q8IWZ3 2542 aaKnown RBP10.14□□□□□ -0.79
LIG1-201ENST00000263274 hDV102S1A0JD36 115 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 VWC2LB2RUY7 222 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 LEPROTL1O95214 131 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 ZC2HC1AQ96GY0 325 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 HIGD1AQ9Y241 93 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 OR4C46A6NHA9 309 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 PPBPP02775 128 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 IGLL1P15814 213 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 AMMECR1LQ6DCA0 310 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 HILPDAQ9Y5L2 63 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 TRAV30A0A087WSZ9 112 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 OR2T8A6NH00 312 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 TOMM40O96008 361 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 TEX36Q5VZQ5 186 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 STXBP6Q8NFX7 210 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 FAM57AQ8TBR7 257 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 SRSF12Q8WXF0 261 aaKnown RBP10.14□□□□□ -0.79
LIG1-201ENST00000263274 TMEM70Q9BUB7 260 aa10.14□□□□□ -0.79
LIG1-201ENST00000263274 MC5RP33032 325 aa10.13□□□□□ -0.79
LIG1-201ENST00000263274 RASL11BQ9BPW5 248 aa10.13□□□□□ -0.79
LIG1-201ENST00000263274 ONECUT1Q9UBC0 465 aa10.13□□□□□ -0.79
LIG1-201ENST00000263274 PTPRQQ9UMZ3 2332 aa10.13□□□□□ -0.79
LIG1-201ENST00000263274 PSMB11A5LHX3 300 aa10.13□□□□□ -0.79
LIG1-201ENST00000263274 FCN3O75636 299 aa10.13□□□□□ -0.79
LIG1-201ENST00000263274 MPV17L2Q567V2 206 aa10.13□□□□□ -0.79
LIG1-201ENST00000263274 KLF17Q5JT82 389 aaPredicted RBP10.13□□□□□ -0.79
LIG1-201ENST00000263274 Q6ZS92 163 aa10.13□□□□□ -0.79
LIG1-201ENST00000263274 Q71RC1 249 aaPredicted RBP10.13□□□□□ -0.79
LIG1-201ENST00000263274 C5orf17Q8NAS9 161 aa10.13□□□□□ -0.79
LIG1-201ENST00000263274 LOC389332A0A1B0GUA5 103 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 IGHV1-8P0DP01 117 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 LOXP28300 417 aaPredicted RBP10.12□□□□□ -0.79
LIG1-201ENST00000263274 CTRLP40313 264 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 CA7P43166 264 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 RNASE6Q93091 150 aaKnown RBP10.12□□□□□ -0.79
LIG1-201ENST00000263274 ABHD17AQ96GS6 310 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 SPG11Q96JI7 2443 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 IGHV3OR16-8A0A075B7F1 116 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 TRAV9-2A0A087WT02 112 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 TCRAP04437 139 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 PNKDQ8N490 385 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 RALYQ9UKM9 306 aaKnown RBP10.12□□□□□ -0.79
LIG1-201ENST00000263274 IGHV3-35A0A0C4DH35 117 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 LY6HO94772 140 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 NUDT3O95989 172 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 IGLV2-23P01705 113 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 PIP4P1Q86T03 277 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 OR8B3Q8NGG8 313 aa10.12□□□□□ -0.79
LIG1-201ENST00000263274 LGALS7P47929 136 aa10.11□□□□□ -0.79
LIG1-201ENST00000263274 C17orf77Q96MU5 243 aa10.11□□□□□ -0.79
LIG1-201ENST00000263274 TMEM133Q9H2Q1 129 aa10.11□□□□□ -0.79
LIG1-201ENST00000263274 MRPL27Q9P0M9 148 aaKnown RBP10.11□□□□□ -0.79
LIG1-201ENST00000263274 IGHV1-69-2A0A0G2JMI3 117 aa10.11□□□□□ -0.79
LIG1-201ENST00000263274 IGLC7A0M8Q6 106 aa10.11□□□□□ -0.79
LIG1-201ENST00000263274 TMEM30BQ3MIR4 351 aa10.11□□□□□ -0.79
LIG1-201ENST00000263274 PPP1R27Q86WC6 154 aa10.11□□□□□ -0.79
LIG1-201ENST00000263274 GTSF1Q8WW33 167 aa10.11□□□□□ -0.79
LIG1-201ENST00000263274 FCGR2BP31994 310 aaPredicted RBP10.11□□□□□ -0.79
LIG1-201ENST00000263274 GAGE12BA1L429 117 aa10.1□□□□□ -0.79
LIG1-201ENST00000263274 SAP30O75446 220 aa10.1□□□□□ -0.79
LIG1-201ENST00000263274 FXYD7P58549 80 aa10.1□□□□□ -0.79
LIG1-201ENST00000263274 FAM231DQ6ZW35 169 aa10.1□□□□□ -0.79
LIG1-201ENST00000263274 PRSS3P2Q8NHM4 247 aa10.1□□□□□ -0.79
LIG1-201ENST00000263274 LINC01560Q8TB33 94 aa10.1□□□□□ -0.79
LIG1-201ENST00000263274 SCNM1Q9BWG6 230 aa10.1□□□□□ -0.79
LIG1-201ENST00000263274 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.1□□□□□ -0.79
LIG1-201ENST00000263274 M0R3E3 92 aa10.1□□□□□ -0.79
LIG1-201ENST00000263274 IGHV3-23P01764 117 aa10.1□□□□□ -0.79
LIG1-201ENST00000263274 PRR30Q53SZ7 412 aaPredicted RBP10.1□□□□□ -0.79
LIG1-201ENST00000263274 MBD6Q96DN6 1003 aa10.1□□□□□ -0.79
LIG1-201ENST00000263274 SMIM12Q96EX1 92 aa10.1□□□□□ -0.79
LIG1-201ENST00000263274 SIGLEC9Q9Y336 463 aa10.1□□□□□ -0.79
LIG1-201ENST00000263274 THBDP07204 575 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 ARF6P62330 175 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 RBPMS2Q6ZRY4 209 aaKnown RBP10.09□□□□□ -0.79
LIG1-201ENST00000263274 LRBAP50851 2863 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 IGHV2-26A0A0B4J1V2 119 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 FAM90A27PA6NNH2 459 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 SPATA12Q7Z6I5 190 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 NUP37Q8NFH4 326 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 OR4F17Q8NGA8 305 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 OR4A5Q8NH83 315 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 C8orf46Q8TAG6 207 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 MRPS16Q9Y3D3 137 aaKnown RBP10.09□□□□□ -0.79
LIG1-201ENST00000263274 IL4P05112 153 aa10.09□□□□□ -0.79
LIG1-201ENST00000263274 SHISA2Q6UWI4 295 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms