RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 FKBP4Q02790 459 aaKnown RBP eCLIP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 SPA17Q15506 151 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 LETM2Q2VYF4 491 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 TUBB8Q3ZCM7 444 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 POTEDQ86YR6 584 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 CCT6BQ92526 530 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 TRIM45Q9H8W5 580 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 FANCFQ9NPI8 374 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 GIMAP4Q9NUV9 329 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 IPO11Q9UI26 975 aaKnown RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 TRIM75PA6NK02 468 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 SFI1A8K8P3 1242 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 SART1O43290 800 aaKnown RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 ZBTB16Q05516 673 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 INF2Q27J81 1249 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 ANKRD13DQ6ZTN6 518 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 PALM2Q8IXS6 379 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 PRIMPOLQ96LW4 560 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 NLRP2Q9NX02 1062 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 KCNH4Q9UQ05 1017 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 DUSP27Q5VZP5 1158 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 HS2ST1Q7LGA3 356 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 CNTROBQ8N137 903 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC114Q96M63 670 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 RIOK1Q9BRS2 568 aaKnown RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 MIS12Q9H081 205 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 TUBB1Q9H4B7 451 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 LRP2BPQ9P2M1 347 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 FREM1Q5H8C1 2179 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 SHANK1Q9Y566 2161 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 TEX28O15482 410 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 MCM6Q14566 821 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 STK38Q15208 465 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 TTC22Q5TAA0 569 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 CKAP2LQ8IYA6 745 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 WNK4Q96J92 1243 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 C16orf45Q96MC5 204 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 TSEN34Q9BSV6 310 aaKnown RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 NUP62CLQ9H1M0 184 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC87Q9NVE4 849 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 GTF3C5Q9Y5Q8 519 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 V9GY48 417 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 A0A1W2PRG0 241 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 GOLGA8BA8MQT2 603 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 CTAGE5O15320 804 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 MGEA5O60502 916 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 CDR2Q01850 454 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 TTC39AQ5SRH9 613 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 IQCGQ9H095 443 aaKnown RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 PPP1R12AO14974 1030 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 NEMFO60524 1076 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 PSIP1O75475 530 aaKnown RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 TMPOP42166 694 aaKnown RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 PEX6Q13608 980 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 TTF1Q15361 905 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 RELL1Q8IUW5 271 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 ANKHD1Q8IWZ3 2542 aaKnown RBP3.11□□□□□ -1.91
SCN1A-219ENST00000641575 SCG2P13521 617 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 ANO6Q4KMQ2 910 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 KRT26Q7Z3Y9 468 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 SRLQ86TD4 932 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 JAKMIP2Q96AA8 810 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 TRAIPQ9BWF2 469 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 TCP11L1Q9NUJ3 509 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 PPP6R1Q9UPN7 881 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 PAXBP1Q9Y5B6 917 aa3.11□□□□□ -1.91
SCN1A-219ENST00000641575 CDC45O75419 566 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 NPM3O75607 178 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 FAM13AO94988 1023 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 PLCG2P16885 1265 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 NEK4P51957 841 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 CALCOCO2Q13137 446 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 KRT33BQ14525 404 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC144BQ3MJ40 725 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 SDE2Q6IQ49 451 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 CNPY4Q8N129 248 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 ZNF248Q8NDW4 579 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 GLT8D2Q9H1C3 349 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 VEZTQ9HBM0 779 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 BICDL2A1A5D9 508 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 TMOD1P28289 359 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 TRIP10Q15642 601 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 GPR158Q5T848 1215 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 RAB42Q8N4Z0 105 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC155Q8N6L0 562 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 EHBP1Q8NDI1 1231 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 CTNNBL1Q8WYA6 563 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 UBAC1Q9BSL1 405 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 VCXQ9H320 206 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 NUB1Q9Y5A7 615 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 DLG5Q8TDM6 1919 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 ENC1O14682 589 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 SERPINI2O75830 405 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 LUC7L3O95232 432 aaKnown RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 OCM2P0CE71 109 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 OCMP0CE72 109 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-219ENST00000641575 CEP85Q6P2H3 762 aa3.1□□□□□ -1.91
SCN1A-219ENST00000641575 SPATS2Q86XZ4 545 aaKnown RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms