RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PPP4R3BQ5MIZ7 849 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 CCAR1Q8IX12 1150 aaKnown RBP4.62□□□□□ -1.67
SCN1A-214ENST00000637038 MPNDQ8N594 471 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 C2orf69Q8N8R5 385 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 KIF18AQ8NI77 898 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 KCNG4Q8TDN1 519 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 MRFAP1L1Q96HT8 127 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 FAM227BQ96M60 508 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 COPRSQ9NQ92 184 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 MRVI1Q9Y6F6 885 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 KCNQ3O43525 872 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 CLSTN1O94985 981 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 ANXA1P04083 346 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 FAM160A1Q05DH4 1040 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 CWF19L2Q2TBE0 894 aaKnown RBP4.62□□□□□ -1.67
SCN1A-214ENST00000637038 ADCK5Q3MIX3 580 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 CEP135Q66GS9 1140 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 ZSCAN25Q6NSZ9 544 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 RBM43Q6ZSC3 357 aaKnown RBP4.62□□□□□ -1.67
SCN1A-214ENST00000637038 Q6ZUG5 572 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 USP50Q70EL3 339 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-214ENST00000637038 CERS3Q8IU89 383 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 RTKN2Q8IZC4 609 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 ZNF710Q8N1W2 664 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 PRRX2Q99811 253 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 NLRP2Q9NX02 1062 aa4.62□□□□□ -1.67
SCN1A-214ENST00000637038 TFIP11Q9UBB9 837 aaKnown RBP4.62□□□□□ -1.67
SCN1A-214ENST00000637038 PFKFB2O60825 505 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 CASP7P55210 303 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 INHBEP58166 350 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 TRIM29Q14134 588 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 GCKRQ14397 625 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 IMMTQ16891 758 aaKnown RBP4.61□□□□□ -1.67
SCN1A-214ENST00000637038 TNNI3KQ59H18 835 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 CCDC158Q5M9N0 1113 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 SARM1Q6SZW1 724 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 LUZP1Q86V48 1076 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 IFNL2Q8IZJ0 200 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 TTLL6Q8N841 843 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 FSIP1Q8NA03 581 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 MRPS27Q92552 414 aaKnown RBP4.61□□□□□ -1.67
SCN1A-214ENST00000637038 EAF2Q96CJ1 260 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-214ENST00000637038 NEUROD6Q96NK8 337 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 DSCC1Q9BVC3 393 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 OGFRQ9NZT2 677 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 IMPACTQ9P2X3 320 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 MKRN1Q9UHC7 482 aaKnown RBP4.61□□□□□ -1.67
SCN1A-214ENST00000637038 AKAP2Q9Y2D5 859 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 FPGT-TNNI3KV9GXZ4 949 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 LAMB1P07942 1786 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 A0A0D9SFI3 127 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 RIOK3O14730 519 aaKnown RBP4.61□□□□□ -1.67
SCN1A-214ENST00000637038 RGL2O15211 777 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 FOXP2O15409 715 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 TAF5LO75529 589 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 GNRH1P01148 92 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 TPM1P09493 284 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 LIG1P18858 919 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 IL15P40933 162 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-214ENST00000637038 OLFM4Q6UX06 510 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 BRAPQ7Z569 592 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 CREBRFQ8IUR6 639 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 XAGE3Q8WTP9 111 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 ZC3H15Q8WU90 426 aaKnown RBP4.61□□□□□ -1.67
SCN1A-214ENST00000637038 CAPNS2Q96L46 248 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 NOL10Q9BSC4 688 aaKnown RBP4.61□□□□□ -1.67
SCN1A-214ENST00000637038 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.61□□□□□ -1.67
SCN1A-214ENST00000637038 DNAJC25Q9H1X3 360 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 BCL2L12Q9HB09 334 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 GPR108Q9NPR9 543 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.61□□□□□ -1.676e-7■■■□□ 17
SCN1A-214ENST00000637038 DDX60LQ5H9U9 1706 aaKnown RBP4.61□□□□□ -1.67
SCN1A-214ENST00000637038 SH3TC1Q8TE82 1336 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 CCDC66A2RUB6 948 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 NEURL1BA8MQ27 555 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 MYO1BO43795 1136 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 KIF20AO95235 890 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 GCP02774 474 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 MYL6BP14649 208 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 HOXD10P28358 340 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 KBTBD3Q8NAB2 608 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 DDX11Q96FC9 970 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 C16orf45Q96MC5 204 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-214ENST00000637038 GPR101Q96P66 508 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-214ENST00000637038 HAUS7Q99871 368 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 KCNF1Q9H3M0 494 aa4.61□□□□□ -1.67
SCN1A-214ENST00000637038 SMC2O95347 1197 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 SFPQP23246 707 aaKnown RBP eCLIP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 RFX5P48382 616 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 CABP4P57796 275 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 FAM193AP78312 1265 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 RESTQ13127 1097 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 AAK1Q2M2I8 961 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 USPL1Q5W0Q7 1092 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 ZNF790Q6PG37 636 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 CCDC174Q6PII3 467 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 ZNF771Q7L3S4 317 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 DDX54Q8TDD1 881 aaKnown RBP4.6□□□□□ -1.67
SCN1A-214ENST00000637038 DCAF5Q96JK2 942 aa4.6□□□□□ -1.67
SCN1A-214ENST00000637038 DACH1Q9UI36 760 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms