RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	RNF217	Q8TC41	542 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	GOLGA1	Q92805	767 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	PARD6B	Q9BYG5	372 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	SIL1	Q9H173	461 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	BCL9	O00512	1426 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	KLHL33	A6NCF5	533 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	GOLGA6L9	A6NEM1	432 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	ATP5J2-PTCD1	G3V325	749 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	ERLIN1	O75477	346 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	URI1	O94763	535 aa	Predicted RBP	12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	MAP4K4	O95819	1239 aa	Predicted RBP	12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	ZKSCAN1	P17029	563 aa	Predicted RBP	12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	ATP5J	P18859	108 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	TXLNA	P40222	546 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	USP5	P45974	858 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	RFX5	P48382	616 aa	Predicted RBP	12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	AK2	P54819	239 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	MAP3K9	P80192	1104 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	PTPN12	Q05209	780 aa	Known RBP	12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	DDR1	Q08345	913 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	TNNI3K	Q59H18	835 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	GORAB	Q5T7V8	394 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	FOXR1	Q6PIV2	292 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	TRIM65	Q6PJ69	517 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	CWC27	Q6UX04	472 aa	Known RBP	12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	RUFY3	Q7L099	469 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	GIMAP7	Q8NHV1	300 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	EAF2	Q96CJ1	260 aa	Predicted RBP	12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	FSD1	Q9BTV5	496 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	LSG1	Q9H089	658 aa	Known RBP	12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	ANO10	Q9NW15	660 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	PARP3	Q9Y6F1	533 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	FPGT-TNNI3K	V9GXZ4	949 aa		12.35	□□□□□ -0.43
CHD2-223	ENST00000636306	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	12.34	□□□□□ -0.43
CHD2-223	ENST00000636306	EXOC5	O00471	708 aa		12.34	□□□□□ -0.43
CHD2-223	ENST00000636306	CIAO1	O76071	339 aa		12.34	□□□□□ -0.43
CHD2-223	ENST00000636306	TUBB	P07437	444 aa		12.34	□□□□□ -0.43
CHD2-223	ENST00000636306	SFPQ	P23246	707 aa	Known RBP eCLIP	12.34	□□□□□ -0.43
CHD2-223	ENST00000636306	IL15	P40933	162 aa	Predicted RBP	12.34	□□□□□ -0.43
CHD2-223	ENST00000636306	TRIM28	Q13263	835 aa	Known RBP	12.34	□□□□□ -0.43
CHD2-223	ENST00000636306	ZKSCAN8	Q15776	578 aa	Predicted RBP	12.34	□□□□□ -0.43
CHD2-223	ENST00000636306	NBPF9	Q3BBW0	867 aa		12.34	□□□□□ -0.43
CHD2-223	ENST00000636306	SNRK	Q9NRH2	765 aa		12.34	□□□□□ -0.43
CHD2-223	ENST00000636306	ZSCAN12	O43309	604 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	A1BG	P04217	495 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	PIP4K2A	P48426	406 aa	Predicted RBP	12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	EPHA10	Q5JZY3	1008 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	LMBR1L	Q6UX01	489 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	GBP6	Q6ZN66	633 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	TTLL7	Q6ZT98	887 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	FMNL3	Q8IVF7	1028 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	SPATA32	Q96LK8	384 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	TM6SF1	Q9BZW5	370 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	NAT10	Q9H0A0	1025 aa	Known RBP	12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	GBP3	Q9H0R5	595 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	CCDC8	Q9H0W5	538 aa	Predicted RBP	12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	CHMP3	Q9Y3E7	222 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	MYH3	P11055	1940 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	ZNF609	O15014	1411 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	PPP2R3A	Q06190	1150 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	TCIRG1	Q13488	830 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	NEDD9	Q14511	834 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	VPS53	Q5VIR6	699 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	MIEF2	Q96C03	454 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	ISCA1	Q9BUE6	129 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	ZBTB3	Q9H5J0	574 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	RAB21	Q9UL25	225 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	SNX14	Q9Y5W7	946 aa		12.33	□□□□□ -0.44
CHD2-223	ENST00000636306	PCCA	P05165	728 aa	Predicted RBP	12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	PSMA5	P28066	241 aa		12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	FOXO4	P98177	505 aa		12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	TUBB2A	Q13885	445 aa		12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	PPP2R5A	Q15172	486 aa		12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	HSP90B2P	Q58FF3	399 aa		12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	DHX40	Q8IX18	779 aa	Known RBP	12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	LEO1	Q8WVC0	666 aa	Predicted RBP	12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	PIGB	Q92521	554 aa		12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	TUBB2B	Q9BVA1	445 aa		12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	PDE11A	Q9HCR9	933 aa		12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	HMG20B	Q9P0W2	317 aa		12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	AKAP2	Q9Y2D5	859 aa		12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	MAP3K15	Q6ZN16	1313 aa		12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	MED23	Q9ULK4	1368 aa		12.32	□□□□□ -0.44
CHD2-223	ENST00000636306	RREB1	Q92766	1687 aa		12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	VPS37C	A5D8V6	355 aa	Predicted RBP	12.31	□□□□□ -0.44
CHD2-223	ENST00000636306		H0YHG0	523 aa		12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	SARNP	P82979	210 aa	Known RBP	12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	TFCP2	Q12800	502 aa		12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	BEND6	Q5SZJ8	279 aa	Predicted RBP	12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	ARMCX5	Q6P1M9	558 aa		12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	C11orf57	Q6ZUT1	292 aa	Predicted RBP	12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	CEP57L1	Q8IYX8	460 aa		12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	KCNB2	Q92953	911 aa		12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	BPIFA3	Q9BQP9	254 aa		12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	PLA2G12B	Q9BX93	195 aa		12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	FAN1	Q9Y2M0	1017 aa		12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	MRFAP1	Q9Y605	127 aa		12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	ATXN2	Q99700	1313 aa	Known RBP	12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	CDHR2	Q9BYE9	1310 aa		12.31	□□□□□ -0.44
CHD2-223	ENST00000636306	PALLD	Q8WX93	1383 aa		12.31	□□□□□ -0.44

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