RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 IGSF1Q8N6C5 1336 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 PLEKHG3A1L390 1219 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 ODF2Q5BJF6 829 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 KCNH5Q8NCM2 988 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 AFAP1L1Q8TED9 768 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 NAPGQ99747 312 aaPredicted RBP12.55□□□□□ -0.4
CLN3-244ENST00000636147 HELLSQ9NRZ9 838 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 ADGRB2O60241 1585 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 REREQ9P2R6 1566 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 NEURL1BA8MQ27 555 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 ATP2C2O75185 946 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 LDHAL6AQ6ZMR3 332 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 CMTR1Q8N1G2 835 aaKnown RBP12.55□□□□□ -0.4
CLN3-244ENST00000636147 ZNF274Q96GC6 653 aaPredicted RBP12.55□□□□□ -0.4
CLN3-244ENST00000636147 TANGO6Q9C0B7 1094 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 CABP5Q9NP86 173 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 CWC25Q9NXE8 425 aaPredicted RBP12.55□□□□□ -0.4
CLN3-244ENST00000636147 AKAP2Q9Y2D5 859 aa12.55□□□□□ -0.4
CLN3-244ENST00000636147 SOWAHDA6NJG2 315 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 TADA3O75528 432 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 HOXB7P09629 217 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 IL15P40933 162 aaPredicted RBP12.54□□□□□ -0.4
CLN3-244ENST00000636147 IFIT5Q13325 482 aaKnown RBP12.54□□□□□ -0.4
CLN3-244ENST00000636147 BRD3Q15059 726 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 POSTNQ15063 836 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 EPHA10Q5JZY3 1008 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 TOGARAM2Q6ZUX3 1019 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 FHOD1Q9Y613 1164 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 SNRPA1P09661 255 aaKnown RBP12.54□□□□□ -0.4
CLN3-244ENST00000636147 STIM1Q13586 685 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 SPA17Q15506 151 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 DIS3L2Q8IYB7 885 aaKnown RBP12.54□□□□□ -0.4
CLN3-244ENST00000636147 PSMB7Q99436 277 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 ZNF446Q9NWS9 450 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 BABAM1Q9NWV8 329 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 FEZ2Q9UHY8 353 aaPredicted RBP12.54□□□□□ -0.4
CLN3-244ENST00000636147 CRB1P82279 1406 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 LIG3P49916 1009 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 SAMSN1Q9NSI8 373 aaKnown RBP12.54□□□□□ -0.4
CLN3-244ENST00000636147 CHD1O14646 1710 aa12.54□□□□□ -0.4
CLN3-244ENST00000636147 hCG_1642624A0A1W2PR95 340 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 TRIM21P19474 475 aaKnown RBP12.53□□□□□ -0.4
CLN3-244ENST00000636147 KRT9P35527 623 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 CCDC122Q5T0U0 273 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 KANK3Q6NY19 840 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 STOX1Q6ZVD7 989 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 SLC35F6Q8N357 371 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 METTL22Q9BUU2 404 aaPredicted RBP12.53□□□□□ -0.4
CLN3-244ENST00000636147 ADGRB3O60242 1522 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 STX10O60499 249 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 UBXN1Q04323 297 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 SRGAP1Q7Z6B7 1085 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 VSTM4Q8IW00 320 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 GIMAP7Q8NHV1 300 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 EEF2KMTQ96G04 330 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 FAM204AQ9H8W3 233 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 LRP2BPQ9P2M1 347 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 MACROD2A1Z1Q3 448 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 ENC1O14682 589 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 RANBP6O60518 1105 aaKnown RBP12.53□□□□□ -0.4
CLN3-244ENST00000636147 FGAP02671 866 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 IQCEQ6IPM2 695 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 CDC5LQ99459 802 aaKnown RBP12.53□□□□□ -0.4
CLN3-244ENST00000636147 ABCB6Q9NP58 842 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 TAB2Q9NYJ8 693 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 BCCIPQ9P287 314 aaKnown RBP eCLIP12.53□□□□□ -0.4
CLN3-244ENST00000636147 ANGEL1Q9UNK9 670 aaKnown RBP12.53□□□□□ -0.4
CLN3-244ENST00000636147 SETBP1Q9Y6X0 1596 aa12.53□□□□□ -0.4
CLN3-244ENST00000636147 CCDC151A5D8V7 595 aa12.52□□□□□ -0.4
CLN3-244ENST00000636147 GOLGA6L10A6NI86 522 aa12.52□□□□□ -0.4
CLN3-244ENST00000636147 BTBD18B2RXH4 712 aa12.52□□□□□ -0.4
CLN3-244ENST00000636147 ADGRB1O14514 1584 aa12.52□□□□□ -0.4
CLN3-244ENST00000636147 GPAA1O43292 621 aa12.52□□□□□ -0.4
CLN3-244ENST00000636147 MCM3P25205 808 aa12.52□□□□□ -0.4
CLN3-244ENST00000636147 MTF1Q14872 753 aa12.52□□□□□ -0.4
CLN3-244ENST00000636147 TTC19Q6DKK2 380 aaPredicted RBP12.52□□□□□ -0.4
CLN3-244ENST00000636147 MLKLQ8NB16 471 aa12.52□□□□□ -0.4
CLN3-244ENST00000636147 EXOC4Q96A65 974 aa12.52□□□□□ -0.4
CLN3-244ENST00000636147 HAUS7Q99871 368 aa12.52□□□□□ -0.4
CLN3-244ENST00000636147 CUTAO60888 179 aa12.52□□□□□ -0.41
CLN3-244ENST00000636147 SLC39A14Q15043 492 aa12.52□□□□□ -0.41
CLN3-244ENST00000636147 RTN1Q16799 776 aa12.52□□□□□ -0.41
CLN3-244ENST00000636147 ZNF790Q6PG37 636 aa12.52□□□□□ -0.41
CLN3-244ENST00000636147 CNGA4Q8IV77 575 aa12.52□□□□□ -0.41
CLN3-244ENST00000636147 SMYD4Q8IYR2 804 aaPredicted RBP12.52□□□□□ -0.41
CLN3-244ENST00000636147 FAM76AQ8TAV0 307 aa12.52□□□□□ -0.41
CLN3-244ENST00000636147 PPM1EQ8WY54 764 aa12.52□□□□□ -0.41
CLN3-244ENST00000636147 DSCC1Q9BVC3 393 aa12.52□□□□□ -0.41
CLN3-244ENST00000636147 H2AFXP16104 143 aaPredicted RBP12.52□□□□□ -0.41
CLN3-244ENST00000636147 HELBQ8NG08 1087 aaPredicted RBP12.52□□□□□ -0.41
CLN3-244ENST00000636147 ATRIPQ8WXE1 791 aa12.52□□□□□ -0.41
CLN3-244ENST00000636147 IP6K1Q92551 441 aa12.52□□□□□ -0.41
CLN3-244ENST00000636147 ZNF496Q96IT1 587 aaPredicted RBP12.52□□□□□ -0.41
CLN3-244ENST00000636147 CTAGE1Q96RT6 745 aa12.52□□□□□ -0.41
CLN3-244ENST00000636147 CDC23Q9UJX2 597 aa12.52□□□□□ -0.41
CLN3-244ENST00000636147 A0A0G2JLW4 131 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 TRIM75PA6NK02 468 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 IKBKBO14920 756 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 CCDC96Q2M329 555 aa12.51□□□□□ -0.41
CLN3-244ENST00000636147 MFSD6Q6ZSS7 791 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms