RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 AOX1Q06278 1338 aa22.22■■□□□ 1.15
CLN3-243ENST00000635973 MANSC4A6NHS7 340 aaPredicted RBP22.21■■□□□ 1.15
CLN3-243ENST00000635973 TCP10L2B9ZVM9 353 aa22.21■■□□□ 1.15
CLN3-243ENST00000635973 INHBEP58166 350 aa22.21■■□□□ 1.15
CLN3-243ENST00000635973 CCDC102BQ68D86 513 aa22.21■■□□□ 1.15
CLN3-243ENST00000635973 CTU1Q7Z7A3 348 aaKnown RBP22.21■■□□□ 1.15
CLN3-243ENST00000635973 SSC5DA1L4H1 1573 aa22.21■■□□□ 1.15
CLN3-243ENST00000635973 ALDH1A1P00352 501 aa22.2■■□□□ 1.14
CLN3-243ENST00000635973 ZBTB48P10074 688 aaPredicted RBP22.2■■□□□ 1.14
CLN3-243ENST00000635973 AACSQ86V21 672 aa22.2■■□□□ 1.14
CLN3-243ENST00000635973 ANKRD13AQ8IZ07 590 aa22.2■■□□□ 1.14
CLN3-243ENST00000635973 CLASRPQ8N2M8 674 aaKnown RBP22.2■■□□□ 1.14
CLN3-243ENST00000635973 USP2O75604 605 aaPredicted RBP22.19■■□□□ 1.14
CLN3-243ENST00000635973 CCDC158Q5M9N0 1113 aa22.19■■□□□ 1.14
CLN3-243ENST00000635973 WDR66Q8TBY9 1149 aa22.19■■□□□ 1.14
CLN3-243ENST00000635973 WNK4Q96J92 1243 aa22.19■■□□□ 1.14
CLN3-243ENST00000635973 CLMNQ96JQ2 1002 aa22.19■■□□□ 1.14
CLN3-243ENST00000635973 LRRCC1Q9C099 1032 aa22.19■■□□□ 1.14
CLN3-243ENST00000635973 CCDC8Q9H0W5 538 aaPredicted RBP22.19■■□□□ 1.14
CLN3-243ENST00000635973 SUGT1Q9Y2Z0 365 aa22.19■■□□□ 1.14
CLN3-243ENST00000635973 SEMA3EO15041 775 aa22.18■■□□□ 1.14
CLN3-243ENST00000635973 GRIK5Q16478 980 aa22.18■■□□□ 1.14
CLN3-243ENST00000635973 TTC39AQ5SRH9 613 aa22.18■■□□□ 1.14
CLN3-243ENST00000635973 ZNF296Q8WUU4 475 aaPredicted RBP22.18■■□□□ 1.14
CLN3-243ENST00000635973 EAF2Q96CJ1 260 aaPredicted RBP22.18■■□□□ 1.14
CLN3-243ENST00000635973 DBNDD2Q9BQY9 259 aa22.18■■□□□ 1.14
CLN3-243ENST00000635973 DCTPP1Q9H773 170 aa22.18■■□□□ 1.14
CLN3-243ENST00000635973 DENND2AQ9ULE3 1009 aa22.18■■□□□ 1.14
CLN3-243ENST00000635973 GPR25O00155 361 aa22.17■■□□□ 1.14
CLN3-243ENST00000635973 IFIT2P09913 472 aaKnown RBP22.17■■□□□ 1.14
CLN3-243ENST00000635973 OTUD7BQ6GQQ9 843 aa22.17■■□□□ 1.14
CLN3-243ENST00000635973 MRIQ9BWK5 157 aa22.17■■□□□ 1.14
CLN3-243ENST00000635973 HDAC1Q13547 482 aaPredicted RBP22.16■■□□□ 1.14
CLN3-243ENST00000635973 RASGRF1Q13972 1273 aa22.16■■□□□ 1.14
CLN3-243ENST00000635973 ZDHHC15Q96MV8 337 aa22.16■■□□□ 1.14
CLN3-243ENST00000635973 TMEM39BQ9GZU3 492 aa22.16■■□□□ 1.14
CLN3-243ENST00000635973 RWDD1Q9H446 243 aaPredicted RBP22.16■■□□□ 1.14
CLN3-243ENST00000635973 TLR7Q9NYK1 1049 aaKnown RBP22.16■■□□□ 1.14
CLN3-243ENST00000635973 ZBTB47Q9UFB7 747 aaPredicted RBP22.16■■□□□ 1.14
CLN3-243ENST00000635973 DBNLQ9UJU6 430 aaKnown RBP22.16■■□□□ 1.14
CLN3-243ENST00000635973 UQCRFS1P1P0C7P4 283 aa22.15■■□□□ 1.14
CLN3-243ENST00000635973 PKN2Q16513 984 aaKnown RBP22.15■■□□□ 1.14
CLN3-243ENST00000635973 IFNL1Q8IU54 200 aa22.15■■□□□ 1.14
CLN3-243ENST00000635973 OTOFQ9HC10 1997 aa22.14■■□□□ 1.14
CLN3-243ENST00000635973 AK9Q5TCS8 1911 aa22.14■■□□□ 1.14
CLN3-243ENST00000635973 SMARCA5O60264 1052 aaPredicted RBP22.14■■□□□ 1.13
CLN3-243ENST00000635973 FKTNO75072 461 aa22.14■■□□□ 1.13
CLN3-243ENST00000635973 CACNB3P54284 484 aa22.14■■□□□ 1.13
CLN3-243ENST00000635973 NOM1Q5C9Z4 860 aaKnown RBP22.14■■□□□ 1.13
CLN3-243ENST00000635973 HHIPL2Q6UWX4 724 aa22.14■■□□□ 1.13
CLN3-243ENST00000635973 HOOK2Q96ED9 719 aa22.14■■□□□ 1.13
CLN3-243ENST00000635973 ELP3Q9H9T3 547 aa22.14■■□□□ 1.13
CLN3-243ENST00000635973 CSADQ9Y600 493 aa22.14■■□□□ 1.13
CLN3-243ENST00000635973 LAMB1P07942 1786 aa22.13■■□□□ 1.13
CLN3-243ENST00000635973 NEFLP07196 543 aa22.13■■□□□ 1.13
CLN3-243ENST00000635973 ARID4AP29374 1257 aaPredicted RBP22.13■■□□□ 1.13
CLN3-243ENST00000635973 TEPSINQ96N21 525 aa22.13■■□□□ 1.13
CLN3-243ENST00000635973 CFHR5Q9BXR6 569 aa22.13■■□□□ 1.13
CLN3-243ENST00000635973 MAP3K9P80192 1104 aa22.12■■□□□ 1.13
CLN3-243ENST00000635973 ZGPATQ8N5A5 531 aaKnown RBP22.12■■□□□ 1.13
CLN3-243ENST00000635973 GCC1Q96CN9 775 aa22.12■■□□□ 1.13
CLN3-243ENST00000635973 OPTNQ96CV9 577 aa22.12■■□□□ 1.13
CLN3-243ENST00000635973 PDS5AQ29RF7 1337 aaKnown RBP22.11■■□□□ 1.13
CLN3-243ENST00000635973 LDHBP07195 334 aaKnown RBP22.11■■□□□ 1.13
CLN3-243ENST00000635973 FAM83AQ86UY5 434 aa22.11■■□□□ 1.13
CLN3-243ENST00000635973 CDAN1Q8IWY9 1227 aa22.11■■□□□ 1.13
CLN3-243ENST00000635973 SPATA5Q8NB90 893 aa22.11■■□□□ 1.13
CLN3-243ENST00000635973 MCAMP43121 646 aa22.1■■□□□ 1.13
CLN3-243ENST00000635973 SOX10P56693 466 aa22.1■■□□□ 1.13
CLN3-243ENST00000635973 FKBP1CQ5VVH2 108 aa22.1■■□□□ 1.13
CLN3-243ENST00000635973 APOBEC3HQ6NTF7 200 aaKnown RBP22.1■■□□□ 1.13
CLN3-243ENST00000635973 PI16Q6UXB8 463 aa22.1■■□□□ 1.13
CLN3-243ENST00000635973 HMG20BQ9P0W2 317 aa22.1■■□□□ 1.13
CLN3-243ENST00000635973 IGF2BP3O00425 579 aaKnown RBP eCLIP22.09■■□□□ 1.13
CLN3-243ENST00000635973 ZBTB22O15209 634 aa22.09■■□□□ 1.13
CLN3-243ENST00000635973 DCAF15Q66K64 600 aa22.09■■□□□ 1.13
CLN3-243ENST00000635973 SNRKQ9NRH2 765 aa22.09■■□□□ 1.13
CLN3-243ENST00000635973 ABCF2Q9UG63 623 aa22.09■■□□□ 1.13
CLN3-243ENST00000635973 SALL1Q9NSC2 1324 aa22.08■■□□□ 1.13
CLN3-243ENST00000635973 GJA5P36382 358 aa22.08■■□□□ 1.13
CLN3-243ENST00000635973 VGLL4Q14135 290 aa22.08■■□□□ 1.13
CLN3-243ENST00000635973 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.08■■□□□ 1.13
CLN3-243ENST00000635973 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.08■■□□□ 1.13
CLN3-243ENST00000635973 GPATCH3Q96I76 525 aa22.08■■□□□ 1.13
CLN3-243ENST00000635973 ZNF512BQ96KM6 892 aaPredicted RBP22.08■■□□□ 1.13
CLN3-243ENST00000635973 R3HDMLQ9H3Y0 253 aa22.08■■□□□ 1.13
CLN3-243ENST00000635973 HPS5Q9UPZ3 1129 aa22.08■■□□□ 1.13
CLN3-243ENST00000635973 PRDX5P30044 214 aa22.07■■□□□ 1.12
CLN3-243ENST00000635973 GTF2A2P52657 109 aa22.07■■□□□ 1.12
CLN3-243ENST00000635973 ANKRD45Q5TZF3 282 aa22.07■■□□□ 1.12
CLN3-243ENST00000635973 SPTY2D1Q68D10 685 aaPredicted RBP22.07■■□□□ 1.12
CLN3-243ENST00000635973 OTUD5Q96G74 571 aa22.07■■□□□ 1.12
CLN3-243ENST00000635973 WRNIP1Q96S55 665 aa22.07■■□□□ 1.12
CLN3-243ENST00000635973 MYH2Q9UKX2 1941 aa22.06■■□□□ 1.12
CLN3-243ENST00000635973 SLC34A2O95436 690 aa22.06■■□□□ 1.12
CLN3-243ENST00000635973 IGHDP01880 384 aa22.06■■□□□ 1.12
CLN3-243ENST00000635973 DIXDC1Q155Q3 683 aa22.06■■□□□ 1.12
CLN3-243ENST00000635973 FBXO46Q6PJ61 603 aaPredicted RBP22.06■■□□□ 1.12
CLN3-243ENST00000635973 DZIP1Q86YF9 867 aaKnown RBP22.06■■□□□ 1.12
CLN3-243ENST00000635973 DAGLAQ9Y4D2 1042 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms