RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 RAI14Q9P0K7 980 aa22.04■■□□□ 1.12
CLN3-239ENST00000628023 LRP2BPQ9P2M1 347 aa22.04■■□□□ 1.12
CLN3-239ENST00000628023 PAPPA2Q9BXP8 1791 aa22.04■■□□□ 1.12
CLN3-239ENST00000628023 SPDYE2BA6NHP3 402 aa22.03■■□□□ 1.12
CLN3-239ENST00000628023 SPDYE6P0CI01 402 aa22.03■■□□□ 1.12
CLN3-239ENST00000628023 HDLBPQ00341 1268 aaKnown RBP22.03■■□□□ 1.12
CLN3-239ENST00000628023 PRAMEF18Q5VWM3 479 aa22.03■■□□□ 1.12
CLN3-239ENST00000628023 RASAL3Q86YV0 1011 aa22.03■■□□□ 1.12
CLN3-239ENST00000628023 SMC5Q8IY18 1101 aa22.03■■□□□ 1.12
CLN3-239ENST00000628023 MTMR14Q8NCE2 650 aa22.03■■□□□ 1.12
CLN3-239ENST00000628023 CSRNP1Q96S65 589 aa22.03■■□□□ 1.12
CLN3-239ENST00000628023 DNAJC2Q99543 621 aaKnown RBP22.03■■□□□ 1.12
CLN3-239ENST00000628023 MCOLN1Q9GZU1 580 aa22.03■■□□□ 1.12
CLN3-239ENST00000628023 RNF186Q9NXI6 227 aa22.03■■□□□ 1.12
CLN3-239ENST00000628023 SCAF8Q9UPN6 1271 aaKnown RBP22.03■■□□□ 1.12
CLN3-239ENST00000628023 PCDHAC2Q9Y5I4 1007 aa22.03■■□□□ 1.12
CLN3-239ENST00000628023 AKAP11Q9UKA4 1901 aa22.02■■□□□ 1.12
CLN3-239ENST00000628023 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.02■■□□□ 1.12
CLN3-239ENST00000628023 ECHDC1Q9NTX5 307 aa22.02■■□□□ 1.12
CLN3-239ENST00000628023 NDUFB9Q9Y6M9 179 aa22.02■■□□□ 1.12
CLN3-239ENST00000628023 UBE2Q2LH0YL09 131 aa22.01■■□□□ 1.11
CLN3-239ENST00000628023 CYP2E1P05181 493 aaPredicted RBP22.01■■□□□ 1.11
CLN3-239ENST00000628023 DIXDC1Q155Q3 683 aa22.01■■□□□ 1.11
CLN3-239ENST00000628023 ARMC9Q7Z3E5 817 aa22.01■■□□□ 1.11
CLN3-239ENST00000628023 SLF2Q8IX21 1173 aa22.01■■□□□ 1.11
CLN3-239ENST00000628023 BOLA2Q9H3K6 86 aa22.01■■□□□ 1.11
CLN3-239ENST00000628023 CLRN2A0PK11 232 aa22■■□□□ 1.11
CLN3-239ENST00000628023 ATP5JP18859 108 aa22■■□□□ 1.11
CLN3-239ENST00000628023 HHIPL2Q6UWX4 724 aa22■■□□□ 1.11
CLN3-239ENST00000628023 ZBED3Q96IU2 234 aaPredicted RBP22■■□□□ 1.11
CLN3-239ENST00000628023 PRMT6Q96LA8 375 aaPredicted RBP22■■□□□ 1.11
CLN3-239ENST00000628023 LNPKQ9C0E8 428 aa22■■□□□ 1.11
CLN3-239ENST00000628023 VEZTQ9HBM0 779 aa22■■□□□ 1.11
CLN3-239ENST00000628023 GSTO1P78417 241 aa21.99■■□□□ 1.11
CLN3-239ENST00000628023 MECOMQ03112 1051 aa21.99■■□□□ 1.11
CLN3-239ENST00000628023 TSHZ3Q63HK5 1081 aa21.99■■□□□ 1.11
CLN3-239ENST00000628023 MOB2Q70IA6 237 aa21.99■■□□□ 1.11
CLN3-239ENST00000628023 ZDHHC15Q96MV8 337 aa21.99■■□□□ 1.11
CLN3-239ENST00000628023 MRIQ9BWK5 157 aa21.99■■□□□ 1.11
CLN3-239ENST00000628023 GOLIM4O00461 696 aa21.98■■□□□ 1.11
CLN3-239ENST00000628023 IDH1O75874 414 aaKnown RBP21.98■■□□□ 1.11
CLN3-239ENST00000628023 TTF1Q15361 905 aaPredicted RBP21.98■■□□□ 1.11
CLN3-239ENST00000628023 CHD1LQ86WJ1 897 aa21.98■■□□□ 1.11
CLN3-239ENST00000628023 OTUD7AQ8TE49 926 aaPredicted RBP21.98■■□□□ 1.11
CLN3-239ENST00000628023 PIH1D3Q9NQM4 214 aaKnown RBP21.98■■□□□ 1.11
CLN3-239ENST00000628023 TMOD2Q9NZR1 351 aa21.98■■□□□ 1.11
CLN3-239ENST00000628023 DAGLAQ9Y4D2 1042 aa21.98■■□□□ 1.11
CLN3-239ENST00000628023 ERC2O15083 957 aa21.97■■□□□ 1.11
CLN3-239ENST00000628023 MX1P20591 662 aa21.97■■□□□ 1.11
CLN3-239ENST00000628023 NUCB1Q02818 461 aa21.97■■□□□ 1.11
CLN3-239ENST00000628023 HAUS7Q99871 368 aa21.97■■□□□ 1.11
CLN3-239ENST00000628023 TDRD3Q9H7E2 651 aaKnown RBP21.97■■□□□ 1.11
CLN3-239ENST00000628023 TTC41PQ6P2S7 1318 aa21.97■■□□□ 1.11
CLN3-239ENST00000628023 LDHCP07864 332 aa21.96■■□□□ 1.11
CLN3-239ENST00000628023 MAP3K12Q12852 859 aa21.96■■□□□ 1.11
CLN3-239ENST00000628023 NAA16Q6N069 864 aaPredicted RBP21.96■■□□□ 1.11
CLN3-239ENST00000628023 NSUN4Q96CB9 384 aaKnown RBP21.96■■□□□ 1.11
CLN3-239ENST00000628023 ANTXR1Q9H6X2 564 aa21.96■■□□□ 1.11
CLN3-239ENST00000628023 PAG1Q9NWQ8 432 aa21.96■■□□□ 1.11
CLN3-239ENST00000628023 MAST2Q6P0Q8 1798 aa21.96■■□□□ 1.11
CLN3-239ENST00000628023 ECM29Q5VYK3 1845 aa21.96■■□□□ 1.11
CLN3-239ENST00000628023 MYH2Q9UKX2 1941 aa21.96■■□□□ 1.11
CLN3-239ENST00000628023 PRKG1Q13976 671 aa21.95■■□□□ 1.1
CLN3-239ENST00000628023 SPDYE2Q495Y8 402 aa21.95■■□□□ 1.1
CLN3-239ENST00000628023 APOBEC3HQ6NTF7 200 aaKnown RBP21.95■■□□□ 1.1
CLN3-239ENST00000628023 NOL10Q9BSC4 688 aaKnown RBP21.95■■□□□ 1.1
CLN3-239ENST00000628023 DEFB129Q9H1M3 183 aa21.95■■□□□ 1.1
CLN3-239ENST00000628023 ZNF70Q9UC06 446 aaPredicted RBP21.95■■□□□ 1.1
CLN3-239ENST00000628023 PPP2R3BQ9Y5P8 575 aa21.95■■□□□ 1.1
CLN3-239ENST00000628023 MROH7-TTC4A0A0A0MT08 1334 aa21.95■■□□□ 1.1
CLN3-239ENST00000628023 AOX1Q06278 1338 aa21.95■■□□□ 1.1
CLN3-239ENST00000628023 IGSF3O75054 1194 aa21.94■■□□□ 1.1
CLN3-239ENST00000628023 MLLT1Q03111 559 aaPredicted RBP21.94■■□□□ 1.1
CLN3-239ENST00000628023 SREBF2Q12772 1141 aa21.94■■□□□ 1.1
CLN3-239ENST00000628023 TNFAIP1Q13829 316 aa21.94■■□□□ 1.1
CLN3-239ENST00000628023 EDC3Q96F86 508 aaKnown RBP21.94■■□□□ 1.1
CLN3-239ENST00000628023 GAKO14976 1311 aa21.94■■□□□ 1.1
CLN3-239ENST00000628023 PPP1R12BO60237 982 aaPredicted RBP21.93■■□□□ 1.1
CLN3-239ENST00000628023 GLRX3O76003 335 aaKnown RBP21.93■■□□□ 1.1
CLN3-239ENST00000628023 BTDP43251 543 aa21.93■■□□□ 1.1
CLN3-239ENST00000628023 SUPT20HL1Q3ZLR7 823 aa21.93■■□□□ 1.1
CLN3-239ENST00000628023 MAGEB6Q8N7X4 407 aa21.93■■□□□ 1.1
CLN3-239ENST00000628023 ANGEL1Q9UNK9 670 aaKnown RBP21.93■■□□□ 1.1
CLN3-239ENST00000628023 TCP10L2B9ZVM9 353 aa21.92■■□□□ 1.1
CLN3-239ENST00000628023 TM4SF4P48230 202 aa21.92■■□□□ 1.1
CLN3-239ENST00000628023 TNNI2P48788 182 aa21.92■■□□□ 1.1
CLN3-239ENST00000628023 RGS19P49795 217 aa21.92■■□□□ 1.1
CLN3-239ENST00000628023 CCDC136Q96JN2 1154 aa21.92■■□□□ 1.1
CLN3-239ENST00000628023 USP40Q9NVE5 1235 aa21.92■■□□□ 1.1
CLN3-239ENST00000628023 SALL3Q9BXA9 1300 aa21.91■■□□□ 1.1
CLN3-239ENST00000628023 CYP7A1P22680 504 aa21.91■■□□□ 1.1
CLN3-239ENST00000628023 CACNB3P54284 484 aa21.91■■□□□ 1.1
CLN3-239ENST00000628023 LDLRAD1Q5T700 205 aa21.91■■□□□ 1.1
CLN3-239ENST00000628023 CDC42EP5Q6NZY7 148 aa21.91■■□□□ 1.1
CLN3-239ENST00000628023 CTU1Q7Z7A3 348 aaKnown RBP21.91■■□□□ 1.1
CLN3-239ENST00000628023 ZNF384Q8TF68 577 aa21.91■■□□□ 1.1
CLN3-239ENST00000628023 SLC10A4Q96EP9 437 aa21.91■■□□□ 1.1
CLN3-239ENST00000628023 FAM163AQ96GL9 167 aaPredicted RBP21.91■■□□□ 1.1
CLN3-239ENST00000628023 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.91■■□□□ 1.12e-6■■■■■ 40.7
CLN3-239ENST00000628023 MYO5AQ9Y4I1 1855 aaKnown RBP21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms