RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	SAMD7	Q7Z3H4	446 aa		11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	TBC1D16	Q8TBP0	767 aa		11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	ZNF804B	A4D1E1	1349 aa		11.43	□□□□□ -0.58
PDLIM5-223	ENST00000627587	SLC5A1	P13866	664 aa		11.43	□□□□□ -0.58
PDLIM5-223	ENST00000627587	KLRK1	P26718	216 aa		11.43	□□□□□ -0.58
PDLIM5-223	ENST00000627587	RASGRF1	Q13972	1273 aa		11.43	□□□□□ -0.58
PDLIM5-223	ENST00000627587	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	11.43	□□□□□ -0.58
PDLIM5-223	ENST00000627587	PIP4P2	Q8N4L2	257 aa		11.43	□□□□□ -0.58
PDLIM5-223	ENST00000627587	AGBL3	Q8NEM8	1001 aa		11.43	□□□□□ -0.58
PDLIM5-223	ENST00000627587	HMG20B	Q9P0W2	317 aa		11.43	□□□□□ -0.58
PDLIM5-223	ENST00000627587	TSKS	Q9UJT2	592 aa		11.43	□□□□□ -0.58
PDLIM5-223	ENST00000627587	DUOX1	Q9NRD9	1551 aa		11.43	□□□□□ -0.58
PDLIM5-223	ENST00000627587	LAMA4	Q16363	1823 aa		11.43	□□□□□ -0.58
PDLIM5-223	ENST00000627587	CCDC171	Q6TFL3	1326 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	BCAM	P50895	628 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	DGKZ	Q13574	1117 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	BECN1	Q14457	450 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	SULF1	Q8IWU6	871 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	SNX21	Q969T3	373 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	SHTN1	A0MZ66	631 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	MCC	P23508	829 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	ZNF157	P51786	506 aa	Predicted RBP	11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	UBE4A	Q14139	1066 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	DOK7	Q18PE1	504 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	KIF4B	Q2VIQ3	1234 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	ZMYM1	Q5SVZ6	1142 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	RBM26	Q5T8P6	1007 aa	Known RBP	11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	CCDC129	Q6ZRS4	1044 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	KIAA1211	Q6ZU35	1233 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	TICAM2	Q86XR7	235 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	RASEF	Q8IZ41	740 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	MAP4K1	Q92918	833 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	PIH1D3	Q9NQM4	214 aa	Known RBP	11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	ANKIB1	Q9P2G1	1089 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	GGA1	Q9UJY5	639 aa		11.42	□□□□□ -0.58
PDLIM5-223	ENST00000627587	MMP14	P50281	582 aa		11.41	□□□□□ -0.58
PDLIM5-223	ENST00000627587	ZNF280A	P59817	542 aa	Predicted RBP	11.41	□□□□□ -0.58
PDLIM5-223	ENST00000627587	FKBP1B	P68106	108 aa		11.41	□□□□□ -0.58
PDLIM5-223	ENST00000627587	NECTIN1	Q15223	517 aa		11.41	□□□□□ -0.58
PDLIM5-223	ENST00000627587	KCNB2	Q92953	911 aa		11.41	□□□□□ -0.58
PDLIM5-223	ENST00000627587	POLR2A	P24928	1970 aa	Known RBP	11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587	FAM155A	B1AL88	458 aa	Predicted RBP	11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587	FOXP2	O15409	715 aa		11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587	SLC34A2	O95436	690 aa		11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587	UQCRFS1P1	P0C7P4	283 aa		11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587	GYG1	P46976	350 aa		11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587	ANAPC15	P60006	121 aa		11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587	KIF23	Q02241	960 aa	Predicted RBP	11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587	TXNRD3	Q86VQ6	643 aa		11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587	FAM84B	Q96KN1	310 aa	Predicted RBP	11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587	SNX14	Q9Y5W7	946 aa		11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587	CASP8AP2	Q9UKL3	1982 aa		11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587	MAST3	O60307	1309 aa		11.4	□□□□□ -0.58
PDLIM5-223	ENST00000627587		M0R2C6	588 aa		11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	RNF113A	O15541	343 aa	Known RBP	11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	UFL1	O94874	794 aa		11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ATP2B4	P23634	1241 aa		11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	COL9A3	Q14050	684 aa	Predicted RBP	11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	RABEP1	Q15276	862 aa		11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	LRRFIP1	Q32MZ4	808 aa	Known RBP	11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	MCMDC2	Q4G0Z9	681 aa		11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	PODN	Q7Z5L7	613 aa		11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	SPATA5	Q8NB90	893 aa		11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	OSBP2	Q969R2	916 aa		11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	KCNQ5	Q9NR82	932 aa		11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	TAF6L	Q9Y6J9	622 aa		11.4	□□□□□ -0.59
PDLIM5-223	ENST00000627587	XDH	P47989	1333 aa		11.39	□□□□□ -0.59
PDLIM5-223	ENST00000627587	PITPNM2	Q9BZ72	1349 aa		11.39	□□□□□ -0.59
PDLIM5-223	ENST00000627587	VPS53	Q5VIR6	699 aa		11.39	□□□□□ -0.59
PDLIM5-223	ENST00000627587	FBXO33	Q7Z6M2	555 aa		11.39	□□□□□ -0.59
PDLIM5-223	ENST00000627587	HELLS	Q9NRZ9	838 aa		11.39	□□□□□ -0.59
PDLIM5-223	ENST00000627587	RBM8A	Q9Y5S9	174 aa	Known RBP	11.39	□□□□□ -0.59
PDLIM5-223	ENST00000627587	TCRBV5S4A2T	A0A5A2	114 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ADM5	C9JUS6	153 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	SLC10A3	P09131	477 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ADD2	P35612	726 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	CDCA5	Q96FF9	252 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ZIC5	Q96T25	663 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ANKRD2	Q9GZV1	360 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	RNF186	Q9NXI6	227 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	USP17L3	A6NCW0	530 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	USP17L4	A6NCW7	530 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	EGFR	P00533	1210 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	USP17L8	P0C7I0	530 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	PRKCSH	P14314	528 aa	Predicted RBP	11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	TTF1	Q15361	905 aa	Predicted RBP	11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ADCK5	Q3MIX3	580 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	USP17L1	Q7RTZ2	530 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	CSRNP1	Q96S65	589 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	PUS7L	Q9H0K6	701 aa	Known RBP	11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	GGA3	Q9NZ52	723 aa		11.38	□□□□□ -0.59
PDLIM5-223	ENST00000627587	MAST2	Q6P0Q8	1798 aa		11.37	□□□□□ -0.59
PDLIM5-223	ENST00000627587	TRPA1	O75762	1119 aa		11.37	□□□□□ -0.59
PDLIM5-223	ENST00000627587	KCNJ4	P48050	445 aa		11.37	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ERICH6	Q7L0X2	663 aa		11.37	□□□□□ -0.59
PDLIM5-223	ENST00000627587	HSCB	Q8IWL3	235 aa		11.37	□□□□□ -0.59
PDLIM5-223	ENST00000627587	GML	Q99445	158 aa		11.37	□□□□□ -0.59
PDLIM5-223	ENST00000627587	SLC27A2	O14975	620 aa		11.36	□□□□□ -0.59

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