RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CCNL1Q9UK58 526 aaPredicted RBP12.43□□□□□ -0.42
CUX1-221ENST00000622516 ME1P48163 572 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 CLEC4GQ6UXB4 293 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 LUZP1Q86V48 1076 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 NAP1L5Q96NT1 182 aaPredicted RBP12.42□□□□□ -0.42
CUX1-221ENST00000622516 SETDB2Q96T68 719 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 SH2B2O14492 632 aaPredicted RBP12.42□□□□□ -0.42
CUX1-221ENST00000622516 ZPR1O75312 459 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 CCDC192P0DO97 292 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 METAP2P50579 478 aaKnown RBP eCLIP12.42□□□□□ -0.423e-6■■■■□ 24.7
CUX1-221ENST00000622516 TYRO3Q06418 890 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 TMEM67Q5HYA8 995 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 CCAR1Q8IX12 1150 aaKnown RBP12.42□□□□□ -0.42
CUX1-221ENST00000622516 GOLPH3LQ9H4A5 285 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 KIF3AQ9Y496 699 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 CYP2D7A0A087X1C5 515 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 KIF28PB7ZC32 967 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 IFIT3O14879 490 aaKnown RBP12.42□□□□□ -0.42
CUX1-221ENST00000622516 APOA5Q6Q788 366 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 IGDCC4Q8TDY8 1250 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 CLIC4Q9Y696 253 aa12.42□□□□□ -0.42
CUX1-221ENST00000622516 DYNLL1P63167 89 aaKnown RBP12.41□□□□□ -0.42
CUX1-221ENST00000622516 EVX2Q03828 476 aa12.41□□□□□ -0.42
CUX1-221ENST00000622516 SLC4A8Q2Y0W8 1093 aa12.41□□□□□ -0.42
CUX1-221ENST00000622516 FBXL16Q8N461 479 aa12.41□□□□□ -0.42
CUX1-221ENST00000622516 MRVI1Q9Y6F6 885 aa12.41□□□□□ -0.42
CUX1-221ENST00000622516 DHX16O60231 1041 aaKnown RBP12.41□□□□□ -0.42
CUX1-221ENST00000622516 ANO6Q4KMQ2 910 aa12.41□□□□□ -0.42
CUX1-221ENST00000622516 MFSD6Q6ZSS7 791 aa12.41□□□□□ -0.42
CUX1-221ENST00000622516 FBXO18Q8NFZ0 1043 aa12.41□□□□□ -0.42
CUX1-221ENST00000622516 ARHGEF1Q92888 912 aaKnown RBP12.41□□□□□ -0.42
CUX1-221ENST00000622516 SRCAPQ6ZRS2 3230 aa12.4□□□□□ -0.42
CUX1-221ENST00000622516 FAM84BQ96KN1 310 aaPredicted RBP12.4□□□□□ -0.42
CUX1-221ENST00000622516 LY9Q9HBG7 655 aa12.4□□□□□ -0.42
CUX1-221ENST00000622516 BSDC1Q9NW68 430 aaPredicted RBP12.4□□□□□ -0.42
CUX1-221ENST00000622516 RCOR1Q9UKL0 485 aa12.4□□□□□ -0.42
CUX1-221ENST00000622516 NOL7Q9UMY1 257 aaKnown RBP12.4□□□□□ -0.42
CUX1-221ENST00000622516 ATRNO75882 1429 aa12.4□□□□□ -0.42
CUX1-221ENST00000622516 A0A1B0GVL5 298 aa12.4□□□□□ -0.42
CUX1-221ENST00000622516 PRDM1O75626 825 aa12.4□□□□□ -0.42
CUX1-221ENST00000622516 CHAF1AQ13111 956 aaPredicted RBP12.4□□□□□ -0.42
CUX1-221ENST00000622516 SF3B3Q15393 1217 aaKnown RBP12.4□□□□□ -0.42
CUX1-221ENST00000622516 AKNAD1Q5T1N1 836 aa12.4□□□□□ -0.42
CUX1-221ENST00000622516 TXNRD3Q86VQ6 643 aa12.4□□□□□ -0.42
CUX1-221ENST00000622516 SPC24Q8NBT2 197 aa12.4□□□□□ -0.42
CUX1-221ENST00000622516 NLRP3Q96P20 1036 aa12.4□□□□□ -0.42
CUX1-221ENST00000622516 NARFQ9UHQ1 456 aa12.4□□□□□ -0.42
CUX1-221ENST00000622516 ZBTB43O43298 467 aa12.39□□□□□ -0.43
CUX1-221ENST00000622516 RPS8P62241 208 aaKnown RBP12.39□□□□□ -0.43
CUX1-221ENST00000622516 ALG1Q9BT22 464 aa12.39□□□□□ -0.43
CUX1-221ENST00000622516 DNAJC25Q9H1X3 360 aa12.39□□□□□ -0.43
CUX1-221ENST00000622516 CLSTN2Q9H4D0 955 aa12.39□□□□□ -0.43
CUX1-221ENST00000622516 PCDHA7Q9UN72 937 aa12.39□□□□□ -0.43
CUX1-221ENST00000622516 RTCBQ9Y3I0 505 aaKnown RBP12.39□□□□□ -0.43
CUX1-221ENST00000622516 LRP5O75197 1615 aa12.39□□□□□ -0.43
CUX1-221ENST00000622516 RPS6KA4O75676 772 aa12.39□□□□□ -0.43
CUX1-221ENST00000622516 CAVIN4Q5BKX8 364 aa12.39□□□□□ -0.43
CUX1-221ENST00000622516 ZNF384Q8TF68 577 aa12.39□□□□□ -0.43
CUX1-221ENST00000622516 ZNF396Q96N95 335 aaPredicted RBP12.39□□□□□ -0.43
CUX1-221ENST00000622516 TTC12Q9H892 705 aaPredicted RBP12.39□□□□□ -0.43
CUX1-221ENST00000622516 RANBP6O60518 1105 aaKnown RBP12.39□□□□□ -0.43
CUX1-221ENST00000622516 SF3A1Q15459 793 aaKnown RBP12.39□□□□□ -0.43
CUX1-221ENST00000622516 MEX3CQ5U5Q3 659 aaKnown RBP12.39□□□□□ -0.43
CUX1-221ENST00000622516 FNBP4Q8N3X1 1017 aaPredicted RBP12.39□□□□□ -0.43
CUX1-221ENST00000622516 FSIP1Q8NA03 581 aa12.39□□□□□ -0.43
CUX1-221ENST00000622516 NACAP1Q9BZK3 213 aa12.39□□□□□ -0.43
CUX1-221ENST00000622516 FAM217BQ9NTX9 383 aaPredicted RBP12.39□□□□□ -0.43
CUX1-221ENST00000622516 DDX19AQ9NUU7 478 aaKnown RBP12.39□□□□□ -0.43
CUX1-221ENST00000622516 SLC12A7Q9Y666 1083 aa12.39□□□□□ -0.43
CUX1-221ENST00000622516 COL1A1P02452 1464 aaPredicted RBP12.38□□□□□ -0.43
CUX1-221ENST00000622516 GOLGA8AA7E2F4 631 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 MARCKSP29966 332 aaPredicted RBP12.38□□□□□ -0.43
CUX1-221ENST00000622516 NUP133Q8WUM0 1156 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 GPR101Q96P66 508 aaPredicted RBP12.38□□□□□ -0.43
CUX1-221ENST00000622516 SLC26A6Q9BXS9 759 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 CCDC39Q9UFE4 941 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 ZKSCAN5Q9Y2L8 839 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.38□□□□□ -0.431e-9■■□□□ 12.2
CUX1-221ENST00000622516 ZMYM6O95789 1325 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 MAGEB6P1A0A0J9YX57 407 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 CCDC69A6NI79 296 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 GUCY1A2P33402 732 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 SNW1Q13573 536 aaKnown RBP12.38□□□□□ -0.43
CUX1-221ENST00000622516 STK38Q15208 465 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 UVSSAQ2YD98 709 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 C17orf53Q8N3J3 647 aaPredicted RBP12.38□□□□□ -0.43
CUX1-221ENST00000622516 CBX8Q9HC52 389 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 GNL3LQ9NVN8 582 aaKnown RBP12.38□□□□□ -0.43
CUX1-221ENST00000622516 CNTNAP4Q9C0A0 1308 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 RTL9Q8NET4 1388 aa12.38□□□□□ -0.43
CUX1-221ENST00000622516 UBE4AQ14139 1066 aa12.37□□□□□ -0.43
CUX1-221ENST00000622516 ALX1Q15699 326 aa12.37□□□□□ -0.43
CUX1-221ENST00000622516 SASS6Q6UVJ0 657 aa12.37□□□□□ -0.43
CUX1-221ENST00000622516 TPTE2Q6XPS3 522 aa12.37□□□□□ -0.43
CUX1-221ENST00000622516 FAM196AQ6ZSG2 479 aa12.37□□□□□ -0.43
CUX1-221ENST00000622516 CHMP4CQ96CF2 233 aa12.37□□□□□ -0.43
CUX1-221ENST00000622516 RFC4P35249 363 aa12.37□□□□□ -0.43
CUX1-221ENST00000622516 IARSP41252 1262 aaKnown RBP12.37□□□□□ -0.43
CUX1-221ENST00000622516 KIF23Q02241 960 aaPredicted RBP12.37□□□□□ -0.43
CUX1-221ENST00000622516 PPARAQ07869 468 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms