RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 FAF1Q9UNN5 650 aaPredicted RBP17.09■□□□□ 0.33
PDLIM2-220ENST00000622226 RIMBP2O15034 1052 aa17.09■□□□□ 0.33
PDLIM2-220ENST00000622226 BMP15O95972 392 aa17.09■□□□□ 0.33
PDLIM2-220ENST00000622226 STMN1P16949 149 aa17.09■□□□□ 0.33
PDLIM2-220ENST00000622226 ST5P78524 1137 aa17.09■□□□□ 0.33
PDLIM2-220ENST00000622226 HAUS7Q99871 368 aa17.09■□□□□ 0.33
PDLIM2-220ENST00000622226 CD109Q6YHK3 1445 aa17.09■□□□□ 0.33
PDLIM2-220ENST00000622226 ATP2B3Q16720 1220 aa17.09■□□□□ 0.33
PDLIM2-220ENST00000622226 UBE3BQ7Z3V4 1068 aa17.09■□□□□ 0.33
PDLIM2-220ENST00000622226 ANXA1P04083 346 aa17.08■□□□□ 0.33
PDLIM2-220ENST00000622226 MYL5Q02045 173 aa17.08■□□□□ 0.33
PDLIM2-220ENST00000622226 VEZTQ9HBM0 779 aa17.08■□□□□ 0.33
PDLIM2-220ENST00000622226 BEND3Q5T5X7 828 aa17.08■□□□□ 0.33
PDLIM2-220ENST00000622226 ARHGAP24Q8N264 748 aa17.08■□□□□ 0.33
PDLIM2-220ENST00000622226 FAM204AQ9H8W3 233 aa17.08■□□□□ 0.33
PDLIM2-220ENST00000622226 ACTN4O43707 911 aaKnown RBP17.08■□□□□ 0.32
PDLIM2-220ENST00000622226 TRIM4Q9C037 500 aa17.08■□□□□ 0.32
PDLIM2-220ENST00000622226 ITIH3Q06033 890 aa17.08■□□□□ 0.32
PDLIM2-220ENST00000622226 PRKG1Q13976 671 aa17.08■□□□□ 0.32
PDLIM2-220ENST00000622226 RASIP1Q5U651 963 aa17.08■□□□□ 0.32
PDLIM2-220ENST00000622226 NOC4LQ9BVI4 516 aaKnown RBP17.08■□□□□ 0.32
PDLIM2-220ENST00000622226 ATP1A2P50993 1020 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 EP400NLQ6ZTU2 488 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 SIRT1Q96EB6 747 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 ARHGAP42A6NI28 874 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 TAOK1Q7L7X3 1001 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 SLC4A4Q9Y6R1 1079 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 C8orf34Q49A92 452 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 KIFC2Q96AC6 838 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 ASIC3Q9UHC3 531 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 KRT15P19012 456 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 GNGT1P63211 74 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 RHPN1Q8TCX5 695 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 STAG1Q8WVM7 1258 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 BCL2L12Q9HB09 334 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 PHF8Q9UPP1 1060 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 PCDHB15Q9Y5E8 787 aa17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 DHX29Q7Z478 1369 aaKnown RBP17.07■□□□□ 0.32
PDLIM2-220ENST00000622226 GPR162Q16538 588 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 TTC19Q6DKK2 380 aaPredicted RBP17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 ABTB1Q969K4 478 aaPredicted RBP17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 CEP104O60308 925 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 CLTAP09496 248 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 GUCY2FP51841 1108 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 ANKRD20A3Q5VUR7 823 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 MRPL46Q9H2W6 279 aaKnown RBP17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 CABP5Q9NP86 173 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 AFG3L2Q9Y4W6 797 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 MAN1A1P33908 653 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 TBC1D8BQ0IIM8 1120 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 GAS8O95995 478 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 VPS41P49754 854 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 RUFY4Q6ZNE9 571 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 JAG2Q9Y219 1238 aa17.06■□□□□ 0.32
PDLIM2-220ENST00000622226 DTNBO60941 627 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 KRT79Q5XKE5 535 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 PI4KAP2A4QPH2 592 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 EAPPQ56P03 285 aaPredicted RBP17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 PI4KAP1Q8N8J0 262 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 KRT23Q9C075 422 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 PDE1AP54750 535 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 KRT71Q3SY84 523 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 PTPRCP08575 1304 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 FAM83GA6ND36 823 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 HS2ST1Q7LGA3 356 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 SNX21Q969T3 373 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 VWA3AA6NCI4 1184 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 NAA16Q6N069 864 aaPredicted RBP17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 PTPDC1A2A3K4 754 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 TRAF5O00463 557 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 TNNI2P48788 182 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 SLF2Q8IX21 1173 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 MEIS3Q99687 375 aa17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 TRIM6Q9C030 488 aaPredicted RBP17.05■□□□□ 0.32
PDLIM2-220ENST00000622226 KRT2P35908 639 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 NBPF6Q5VWK0 638 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 CYP26C1Q6V0L0 522 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 NBPF5PQ86XG9 351 aaPredicted RBP17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 NME9Q86XW9 330 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 NBPF4Q96M43 638 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 BEGAINQ9BUH8 593 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 I3L4J1 428 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 BAG3O95817 575 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 ZMAT2Q96NC0 199 aaKnown RBP17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 HIP1RO75146 1068 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 TNFAIP3P21580 790 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 CYP7A1P22680 504 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 NMIQ13287 307 aaPredicted RBP17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 IGF1RP08069 1367 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 CPA1P15085 419 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 DBF4Q9UBU7 674 aaPredicted RBP17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 PICALMQ13492 652 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 HINFPQ9BQA5 517 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 MSH6P52701 1360 aa17.04■□□□□ 0.32
PDLIM2-220ENST00000622226 ESR2Q92731 530 aa17.03■□□□□ 0.32
PDLIM2-220ENST00000622226 CRNKL1Q9BZJ0 848 aaKnown RBP17.03■□□□□ 0.32
PDLIM2-220ENST00000622226 SECISBP2LQ93073 1101 aaKnown RBP17.03■□□□□ 0.32
PDLIM2-220ENST00000622226 ZRANB1Q9UGI0 708 aa17.03■□□□□ 0.32
PDLIM2-220ENST00000622226 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.03■□□□□ 0.32
PDLIM2-220ENST00000622226 EMILIN1Q9Y6C2 1016 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms