RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 ISM2Q6H9L7 571 aa12.4□□□□□ -0.42
VPS11-208ENST00000621676 NCOA7Q8NI08 942 aa12.4□□□□□ -0.42
VPS11-208ENST00000621676 ZNF277Q9NRM2 450 aaPredicted RBP12.4□□□□□ -0.42
VPS11-208ENST00000621676 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.4□□□□□ -0.42
VPS11-208ENST00000621676 ARFGEF2Q9Y6D5 1785 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 ECM2O94769 699 aaPredicted RBP12.39□□□□□ -0.43
VPS11-208ENST00000621676 GAS2L3Q86XJ1 694 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 RBM17Q96I25 401 aaKnown RBP12.39□□□□□ -0.43
VPS11-208ENST00000621676 MED23Q9ULK4 1368 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 PPEF1O14829 653 aaPredicted RBP12.39□□□□□ -0.43
VPS11-208ENST00000621676 NLGN1Q8N2Q7 840 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 SLC26A6Q9BXS9 759 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 NBPF3Q9H094 633 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 CD209Q9NNX6 404 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 KCNJ14Q9UNX9 436 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 PNPLA7Q6ZV29 1317 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 SIPA1L3O60292 1781 aaPredicted RBP12.39□□□□□ -0.43
VPS11-208ENST00000621676 USP17L3A6NCW0 530 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 USP17L4A6NCW7 530 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 TULP1O00294 542 aaPredicted RBP12.39□□□□□ -0.43
VPS11-208ENST00000621676 MPHOSPH10O00566 681 aaKnown RBP12.39□□□□□ -0.43
VPS11-208ENST00000621676 ANTXR2P58335 489 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 UBE4AQ14139 1066 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 SLC15A2Q16348 729 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 SHROOM1Q2M3G4 852 aaPredicted RBP12.39□□□□□ -0.43
VPS11-208ENST00000621676 LRRFIP1Q32MZ4 808 aaKnown RBP12.39□□□□□ -0.43
VPS11-208ENST00000621676 SPECC1Q5M775 1068 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 USP17L1Q7RTZ2 530 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 TBC1D16Q8TBP0 767 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 NACAP1Q9BZK3 213 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 MKNK2Q9HBH9 465 aa12.39□□□□□ -0.43
VPS11-208ENST00000621676 TTF2Q9UNY4 1162 aaKnown RBP12.39□□□□□ -0.43
VPS11-208ENST00000621676 CLRN2A0PK11 232 aa12.38□□□□□ -0.43
VPS11-208ENST00000621676 ZSCAN25Q6NSZ9 544 aa12.38□□□□□ -0.43
VPS11-208ENST00000621676 CKAP2LQ8IYA6 745 aa12.38□□□□□ -0.43
VPS11-208ENST00000621676 UBAC1Q9BSL1 405 aa12.38□□□□□ -0.43
VPS11-208ENST00000621676 ORC3Q9UBD5 711 aaPredicted RBP12.38□□□□□ -0.43
VPS11-208ENST00000621676 BCS1LQ9Y276 419 aa12.38□□□□□ -0.43
VPS11-208ENST00000621676 SHANK3Q9BYB0 1731 aa12.38□□□□□ -0.43
VPS11-208ENST00000621676 TSPY2A6NKD2 308 aa12.38□□□□□ -0.43
VPS11-208ENST00000621676 H0YIN7 160 aa12.38□□□□□ -0.43
VPS11-208ENST00000621676 MCM5P33992 734 aa12.38□□□□□ -0.43
VPS11-208ENST00000621676 ZRSR1Q15695 479 aaKnown RBP12.38□□□□□ -0.43
VPS11-208ENST00000621676 HOMER1Q86YM7 354 aa12.38□□□□□ -0.43
VPS11-208ENST00000621676 CCDC69A6NI79 296 aa12.37□□□□□ -0.43
VPS11-208ENST00000621676 PDIA3P30101 505 aaKnown RBP12.37□□□□□ -0.43
VPS11-208ENST00000621676 PLCD1P51178 756 aa12.37□□□□□ -0.43
VPS11-208ENST00000621676 CTNNA3Q9UI47 895 aa12.37□□□□□ -0.43
VPS11-208ENST00000621676 PATL2C9JE40 543 aaKnown RBP12.37□□□□□ -0.43
VPS11-208ENST00000621676 MARCKSP29966 332 aaPredicted RBP12.37□□□□□ -0.43
VPS11-208ENST00000621676 ARID4AP29374 1257 aaPredicted RBP12.37□□□□□ -0.43
VPS11-208ENST00000621676 CDC27P30260 824 aa12.37□□□□□ -0.43
VPS11-208ENST00000621676 PRAMEF18Q5VWM3 479 aa12.37□□□□□ -0.43
VPS11-208ENST00000621676 GPT2Q8TD30 523 aa12.37□□□□□ -0.43
VPS11-208ENST00000621676 FZD1Q9UP38 647 aa12.37□□□□□ -0.43
VPS11-208ENST00000621676 ZFYP08048 801 aaPredicted RBP12.36□□□□□ -0.43
VPS11-208ENST00000621676 GUCY1A2P33402 732 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 PRKG1Q13976 671 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 BICD2Q8TD16 824 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 NSUN4Q96CB9 384 aaKnown RBP12.36□□□□□ -0.43
VPS11-208ENST00000621676 SLC12A7Q9Y666 1083 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 ZSCAN22P10073 491 aaPredicted RBP12.36□□□□□ -0.43
VPS11-208ENST00000621676 BTDP43251 543 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 METAP2P50579 478 aaKnown RBP eCLIP12.36□□□□□ -0.43
VPS11-208ENST00000621676 PPARAQ07869 468 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 SLC27A3Q5K4L6 730 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 GIMAP6Q6P9H5 292 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.36□□□□□ -0.43
VPS11-208ENST00000621676 TCRBV5S4A2TA0A5A2 114 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 ERICH2A1L162 156 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 GOLGA8AA7E2F4 631 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 VEGFAP15692 232 aaPredicted RBP12.36□□□□□ -0.43
VPS11-208ENST00000621676 BAG6P46379 1132 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 CCDC84Q86UT8 332 aaPredicted RBP12.36□□□□□ -0.43
VPS11-208ENST00000621676 NOL10Q9BSC4 688 aaKnown RBP12.36□□□□□ -0.43
VPS11-208ENST00000621676 DSCC1Q9BVC3 393 aa12.36□□□□□ -0.43
VPS11-208ENST00000621676 XDHP47989 1333 aa12.35□□□□□ -0.43
VPS11-208ENST00000621676 SRGNP10124 158 aa12.35□□□□□ -0.43
VPS11-208ENST00000621676 MCM2P49736 904 aa12.35□□□□□ -0.43
VPS11-208ENST00000621676 KRT32Q14532 448 aa12.35□□□□□ -0.43
VPS11-208ENST00000621676 ZYXQ15942 572 aaKnown RBP12.35□□□□□ -0.43
VPS11-208ENST00000621676 ZNF804AQ7Z570 1209 aa12.35□□□□□ -0.43
VPS11-208ENST00000621676 TEX11Q8IYF3 940 aa12.35□□□□□ -0.43
VPS11-208ENST00000621676 ANKRD2Q9GZV1 360 aa12.35□□□□□ -0.43
VPS11-208ENST00000621676 MTMR6Q9Y217 621 aa12.35□□□□□ -0.43
VPS11-208ENST00000621676 BRCA2P51587 3418 aa12.35□□□□□ -0.43
VPS11-208ENST00000621676 ATRNO75882 1429 aa12.35□□□□□ -0.43
VPS11-208ENST00000621676 VEZTQ9HBM0 779 aa12.35□□□□□ -0.43
VPS11-208ENST00000621676 PPIP5K2O43314 1243 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 CTDNEP1O95476 244 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 UBE3CQ15386 1083 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 SHTN1A0MZ66 631 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 F13A1P00488 732 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 SYNE3Q6ZMZ3 975 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 ZFPM1Q8IX07 1006 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 LMBRD1Q9NUN5 540 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 TMEM63CQ9P1W3 806 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 MRVI1Q9Y6F6 885 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 NUP98P52948 1817 aa12.34□□□□□ -0.43
VPS11-208ENST00000621676 GOLGA6L3A6NEY3 463 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms