RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TEX11Q8IYF3 940 aa18.37■□□□□ 0.53
CPSF1-213ENST00000620219 DBNDD1Q9H9R9 158 aa18.37■□□□□ 0.53
CPSF1-213ENST00000620219 SLF2Q8IX21 1173 aa18.37■□□□□ 0.53
CPSF1-213ENST00000620219 BBOX1O75936 387 aa18.37■□□□□ 0.53
CPSF1-213ENST00000620219 MBD3O95983 291 aa18.37■□□□□ 0.53
CPSF1-213ENST00000620219 CNNM2Q9H8M5 875 aa18.37■□□□□ 0.53
CPSF1-213ENST00000620219 ATP2B4P23634 1241 aa18.36■□□□□ 0.53
CPSF1-213ENST00000620219 CUL4AQ13619 759 aa18.36■□□□□ 0.53
CPSF1-213ENST00000620219 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.36■□□□□ 0.53
CPSF1-213ENST00000620219 TTC14Q96N46 770 aa18.36■□□□□ 0.53
CPSF1-213ENST00000620219 BRD1O95696 1058 aa18.36■□□□□ 0.53
CPSF1-213ENST00000620219 F13A1P00488 732 aa18.36■□□□□ 0.53
CPSF1-213ENST00000620219 FAM47AQ5JRC9 791 aa18.36■□□□□ 0.53
CPSF1-213ENST00000620219 IFIT1BQ5T764 474 aaKnown RBP18.36■□□□□ 0.53
CPSF1-213ENST00000620219 OLFM4Q6UX06 510 aa18.36■□□□□ 0.53
CPSF1-213ENST00000620219 LEMD3Q9Y2U8 911 aa18.36■□□□□ 0.53
CPSF1-213ENST00000620219 AFDNP55196 1824 aaKnown RBP18.36■□□□□ 0.53
CPSF1-213ENST00000620219 CATIPQ7Z7H3 387 aa18.36■□□□□ 0.53
CPSF1-213ENST00000620219 TXNRD3Q86VQ6 643 aa18.36■□□□□ 0.53
CPSF1-213ENST00000620219 STRBPQ96SI9 672 aaKnown RBP18.36■□□□□ 0.53
CPSF1-213ENST00000620219 GADD45BO75293 160 aaPredicted RBP18.35■□□□□ 0.53
CPSF1-213ENST00000620219 GPSM2P81274 684 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 MECOMQ03112 1051 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 KLHL40Q2TBA0 621 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 TULP1O00294 542 aaPredicted RBP18.35■□□□□ 0.53
CPSF1-213ENST00000620219 CHRNA5P30532 468 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 CCDC73Q6ZRK6 1079 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 KIAA0825Q8IV33 1275 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 CMTR1Q8N1G2 835 aaKnown RBP18.35■□□□□ 0.53
CPSF1-213ENST00000620219 CTCFLQ8NI51 663 aaPredicted RBP18.35■□□□□ 0.53
CPSF1-213ENST00000620219 XBP1P17861 261 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 LMBRD1Q9NUN5 540 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 ANGEL1Q9UNK9 670 aaKnown RBP18.35■□□□□ 0.53
CPSF1-213ENST00000620219 ZBTB7AO95365 584 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 MRE11P49959 708 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 CAMK4Q16566 473 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 AKNAD1Q5T1N1 836 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 EYA3Q99504 573 aa18.35■□□□□ 0.53
CPSF1-213ENST00000620219 NASPP49321 788 aaPredicted RBP18.34■□□□□ 0.53
CPSF1-213ENST00000620219 CDC37L1Q7L3B6 337 aa18.34■□□□□ 0.53
CPSF1-213ENST00000620219 PHKBQ93100 1093 aa18.34■□□□□ 0.53
CPSF1-213ENST00000620219 VAT1LQ9HCJ6 419 aa18.34■□□□□ 0.53
CPSF1-213ENST00000620219 LRP6O75581 1613 aa18.34■□□□□ 0.53
CPSF1-213ENST00000620219 TSPY3P0CV98 308 aa18.34■□□□□ 0.53
CPSF1-213ENST00000620219 TSPY8P0CW00 308 aa18.34■□□□□ 0.53
CPSF1-213ENST00000620219 ARID4AP29374 1257 aaPredicted RBP18.34■□□□□ 0.53
CPSF1-213ENST00000620219 PPARAQ07869 468 aa18.34■□□□□ 0.53
CPSF1-213ENST00000620219 STOX1Q6ZVD7 989 aa18.34■□□□□ 0.53
CPSF1-213ENST00000620219 TTF2Q9UNY4 1162 aaKnown RBP18.34■□□□□ 0.53
CPSF1-213ENST00000620219 XRCC6P12956 609 aaKnown RBP eCLIP18.34■□□□□ 0.532e-8■□□□□ 10.1
CPSF1-213ENST00000620219 SSRP1Q08945 709 aaKnown RBP18.33■□□□□ 0.53
CPSF1-213ENST00000620219 hCG_1642624A0A1W2PR95 340 aa18.33■□□□□ 0.53
CPSF1-213ENST00000620219 DDIT3P35638 169 aa18.33■□□□□ 0.53
CPSF1-213ENST00000620219 ZNF396Q96N95 335 aaPredicted RBP18.33■□□□□ 0.53
CPSF1-213ENST00000620219 ADD1P35611 737 aaKnown RBP18.33■□□□□ 0.52
CPSF1-213ENST00000620219 RTN1Q16799 776 aa18.33■□□□□ 0.52
CPSF1-213ENST00000620219 SDF4Q9BRK5 362 aa18.33■□□□□ 0.52
CPSF1-213ENST00000620219 ALG1Q9BT22 464 aa18.33■□□□□ 0.52
CPSF1-213ENST00000620219 COL16A1Q07092 1604 aaPredicted RBP18.33■□□□□ 0.52
CPSF1-213ENST00000620219 POLD1P28340 1107 aa18.33■□□□□ 0.52
CPSF1-213ENST00000620219 TCP10Q12799 353 aa18.33■□□□□ 0.52
CPSF1-213ENST00000620219 RBM26Q5T8P6 1007 aaKnown RBP18.33■□□□□ 0.52
CPSF1-213ENST00000620219 ZNF827Q17R98 1081 aa18.32■□□□□ 0.52
CPSF1-213ENST00000620219 ZSCAN23Q3MJ62 389 aa18.32■□□□□ 0.52
CPSF1-213ENST00000620219 MED23Q9ULK4 1368 aa18.32■□□□□ 0.52
CPSF1-213ENST00000620219 PPIP5K2O43314 1243 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 TOB2Q14106 344 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-213ENST00000620219 KAT14Q9H8E8 782 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 TMOD2Q9NZR1 351 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 CCDC196A0A1B0GTZ2 297 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 MARCH6O60337 910 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 EIF6P56537 245 aaKnown RBP18.31■□□□□ 0.52
CPSF1-213ENST00000620219 SCRN1Q12765 414 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 DRC7Q8IY82 874 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 GTF3C6Q969F1 213 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 POTEAQ6S8J7 498 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 FGFR2P21802 821 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 LARGE2Q8N3Y3 721 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 ZNF287Q9HBT7 754 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 CFAP45Q9UL16 551 aa18.31■□□□□ 0.52
CPSF1-213ENST00000620219 DDR1Q08345 913 aa18.3■□□□□ 0.52
CPSF1-213ENST00000620219 SLC10A5Q5PT55 438 aa18.3■□□□□ 0.52
CPSF1-213ENST00000620219 GAS2L3Q86XJ1 694 aa18.3■□□□□ 0.52
CPSF1-213ENST00000620219 HOMER1Q86YM7 354 aa18.3■□□□□ 0.52
CPSF1-213ENST00000620219 TBC1D10CQ8IV04 446 aa18.3■□□□□ 0.52
CPSF1-213ENST00000620219 C21orf2O43822 256 aa18.3■□□□□ 0.52
CPSF1-213ENST00000620219 NPR1P16066 1061 aa18.3■□□□□ 0.52
CPSF1-213ENST00000620219 VGLL2Q8N8G2 317 aa18.3■□□□□ 0.52
CPSF1-213ENST00000620219 BRMS1Q9HCU9 246 aa18.3■□□□□ 0.52
CPSF1-213ENST00000620219 CD209Q9NNX6 404 aa18.3■□□□□ 0.52
CPSF1-213ENST00000620219 BTDP43251 543 aa18.3■□□□□ 0.52
CPSF1-213ENST00000620219 SLC51AQ86UW1 340 aa18.29■□□□□ 0.52
CPSF1-213ENST00000620219 GPT2Q8TD30 523 aa18.29■□□□□ 0.52
CPSF1-213ENST00000620219 PKD1L3Q7Z443 1732 aa18.29■□□□□ 0.52
CPSF1-213ENST00000620219 PDIA3P30101 505 aaKnown RBP18.29■□□□□ 0.52
CPSF1-213ENST00000620219 BRIP1Q9BX63 1249 aa18.29■□□□□ 0.52
CPSF1-213ENST00000620219 USP17L8P0C7I0 530 aa18.29■□□□□ 0.52
CPSF1-213ENST00000620219 VEZTQ9HBM0 779 aa18.29■□□□□ 0.52
CPSF1-213ENST00000620219 MASTLQ96GX5 879 aa18.28■□□□□ 0.52
CPSF1-213ENST00000620219 ZSWIM5Q9P217 1185 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms