RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 BICD2Q8TD16 824 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 PARD3BQ8TEW8 1205 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 OSBPL3Q9H4L5 887 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 SPG7Q9UQ90 795 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 SLIT3O75094 1523 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 BRINP3Q76B58 766 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 AMOTL1Q8IY63 956 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 IFNL2Q8IZJ0 200 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 CLIC6Q96NY7 704 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 DNAJC25Q9H1X3 360 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 DNAJC5Q9H3Z4 198 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 FAM204AQ9H8W3 233 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 ZNF330Q9Y3S2 320 aaPredicted RBP11.68□□□□□ -0.54
VPS39-214ENST00000614932 PARP3Q9Y6F1 533 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 CAPN7Q9Y6W3 813 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 USP54Q70EL1 1684 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 HOXB7P09629 217 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 SETSIPP0DME0 302 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 MAGEA8P43361 318 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 CABP4P57796 275 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 POLA2Q14181 598 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 DHX8Q14562 1220 aaKnown RBP11.68□□□□□ -0.54
VPS39-214ENST00000614932 CCDC8Q9H0W5 538 aaPredicted RBP11.68□□□□□ -0.54
VPS39-214ENST00000614932 KDM4CQ9H3R0 1056 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 CHCHD3Q9NX63 227 aaKnown RBP11.68□□□□□ -0.54
VPS39-214ENST00000614932 KDM6AO15550 1401 aaPredicted RBP11.67□□□□□ -0.54
VPS39-214ENST00000614932 ABCD1P33897 745 aa11.67□□□□□ -0.54
VPS39-214ENST00000614932 TXLNAP40222 546 aa11.67□□□□□ -0.54
VPS39-214ENST00000614932 SF3A1Q15459 793 aaKnown RBP11.67□□□□□ -0.54
VPS39-214ENST00000614932 SKIDA1Q1XH10 827 aa11.67□□□□□ -0.54
VPS39-214ENST00000614932 NFXL1Q6ZNB6 911 aa11.67□□□□□ -0.54
VPS39-214ENST00000614932 RBM43Q6ZSC3 357 aaKnown RBP11.67□□□□□ -0.54
VPS39-214ENST00000614932 ARMCX6Q7L4S7 300 aa11.67□□□□□ -0.54
VPS39-214ENST00000614932 NRDCO43847 1150 aa11.67□□□□□ -0.54
VPS39-214ENST00000614932 IGKV5-2P06315 115 aa11.67□□□□□ -0.54
VPS39-214ENST00000614932 DNM1Q05193 864 aaKnown RBP11.67□□□□□ -0.54
VPS39-214ENST00000614932 SNX1Q13596 522 aa11.67□□□□□ -0.54
VPS39-214ENST00000614932 SETDB1Q15047 1291 aa11.67□□□□□ -0.54
VPS39-214ENST00000614932 BEND6Q5SZJ8 279 aaPredicted RBP11.67□□□□□ -0.54
VPS39-214ENST00000614932 ISM2Q6H9L7 571 aa11.67□□□□□ -0.54
VPS39-214ENST00000614932 GOLGA1Q92805 767 aa11.67□□□□□ -0.54
VPS39-214ENST00000614932 CRACR2AQ9BSW2 395 aa11.67□□□□□ -0.54
VPS39-214ENST00000614932 OSBPL5Q9H0X9 879 aaPredicted RBP11.67□□□□□ -0.54
VPS39-214ENST00000614932 DDX21Q9NR30 783 aaKnown RBP eCLIP11.67□□□□□ -0.54
VPS39-214ENST00000614932 STRCP1A6NGW2 1772 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 SYT1P21579 422 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 CCT5P48643 541 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 FNTAP49354 379 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 PPP2R3AQ06190 1150 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 CEP112Q8N8E3 955 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 CCDC102AQ96A19 550 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 XAGE2Q96GT9 111 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 KAZALD1Q96I82 304 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 TRPM3Q9HCF6 1732 aaPredicted RBP11.66□□□□□ -0.54
VPS39-214ENST00000614932 HYPKQ9NX55 129 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 IMPACTQ9P2X3 320 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 SMC3Q9UQE7 1217 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 SPATA31A3Q5VYP0 1347 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 GRM8O00222 908 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 ATP2B2Q01814 1243 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 EPHA10Q5JZY3 1008 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 ARMC3Q5W041 872 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 TRIM65Q6PJ69 517 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 KIAA1328Q86T90 577 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 PI4K2BQ8TCG2 481 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 AFAP1L1Q8TED9 768 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 ZBTB10Q96DT7 871 aa11.66□□□□□ -0.54
VPS39-214ENST00000614932 FRMD3A2A2Y4 597 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 ERLIN1O75477 346 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 RAB27AP51159 221 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 IQCB1Q15051 598 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 AACSQ86V21 672 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 CCDC150Q8NCX0 1101 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 SAAL1Q96ER3 474 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 DDX19AQ9NUU7 478 aaKnown RBP11.65□□□□□ -0.54
VPS39-214ENST00000614932 TLR7Q9NYK1 1049 aaKnown RBP11.65□□□□□ -0.54
VPS39-214ENST00000614932 NDUFB9Q9Y6M9 179 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 MYO1FO00160 1098 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 PHACTR2O75167 634 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 SKAP2O75563 359 aaPredicted RBP11.65□□□□□ -0.54
VPS39-214ENST00000614932 DDX58O95786 925 aaKnown RBP11.65□□□□□ -0.54
VPS39-214ENST00000614932 NAA25Q14CX7 972 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 HOMER3Q9NSC5 361 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 CHMP3Q9Y3E7 222 aa11.65□□□□□ -0.54
VPS39-214ENST00000614932 FSBPO95073 299 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 CPA1P15085 419 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 USP5P45974 858 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 SLC8A3P57103 927 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 RCSD1Q6JBY9 416 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 C3orf20Q8ND61 904 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 DACT1Q9NYF0 836 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 STAP2Q9UGK3 403 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 L1RE1Q9UN81 338 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 KDM3BQ7LBC6 1761 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 RAB11FIP3O75154 756 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 IFIT2P09913 472 aaKnown RBP11.64□□□□□ -0.55
VPS39-214ENST00000614932 NAP1L1P55209 391 aaKnown RBP11.64□□□□□ -0.55
VPS39-214ENST00000614932 MAP3K9P80192 1104 aa11.64□□□□□ -0.55
VPS39-214ENST00000614932 CDCA2Q69YH5 1023 aaPredicted RBP11.64□□□□□ -0.55
VPS39-214ENST00000614932 TSHZ1Q6ZSZ6 1077 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms