RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 LSG1Q9H089 658 aaKnown RBP15.63■□□□□ 0.09
GGA3-220ENST00000613421 CALCOCO1Q9P1Z2 691 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 ZNF532Q9HCE3 1301 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 CTAGE9A4FU28 777 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 GTPBP4Q9BZE4 634 aaKnown RBP15.62■□□□□ 0.09
GGA3-220ENST00000613421 TPCN1Q9ULQ1 816 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 MROH5Q6ZUA9 1318 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 TAF5LO75529 589 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 DESP17661 470 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 GTF2F1P35269 517 aaKnown RBP eCLIP15.62■□□□□ 0.09
GGA3-220ENST00000613421 UNC5CLQ8IV45 518 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 CEP112Q8N8E3 955 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 MTMR6Q9Y217 621 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 UBXN1Q04323 297 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 TRAF1Q13077 416 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 SPATA5Q8NB90 893 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 CD2BP2O95400 341 aaKnown RBP15.62■□□□□ 0.09
GGA3-220ENST00000613421 HAUS7Q99871 368 aa15.62■□□□□ 0.09
GGA3-220ENST00000613421 RNF216Q9NWF9 866 aaPredicted RBP15.62■□□□□ 0.09
GGA3-220ENST00000613421 MADDQ8WXG6 1647 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 KRT83P78385 493 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 KRT40Q6A162 431 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 ZNF202O95125 648 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 USP8P40818 1118 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 TNNI2P48788 182 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 KARSQ15046 597 aaKnown RBP15.61■□□□□ 0.09
GGA3-220ENST00000613421 IFI16Q16666 785 aaKnown RBP15.61■□□□□ 0.09
GGA3-220ENST00000613421 SAMM50Q9Y512 469 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 PROSER3Q2NL68 480 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 GOLGA1Q92805 767 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 MYL10Q9BUA6 226 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 ERBB4Q15303 1308 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 HIBADHP31937 336 aaKnown RBP15.61■□□□□ 0.09
GGA3-220ENST00000613421 CTDSPL2Q05D32 466 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 GPT2Q8TD30 523 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 PHKBQ93100 1093 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 MMRN2Q9H8L6 949 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 LZTFL1Q9NQ48 299 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 CCDC87Q9NVE4 849 aa15.61■□□□□ 0.09
GGA3-220ENST00000613421 RNF17Q9BXT8 1623 aaKnown RBP15.6■□□□□ 0.09
GGA3-220ENST00000613421 BAG1Q99933 345 aaPredicted RBP15.6■□□□□ 0.09
GGA3-220ENST00000613421 ANTXR1Q9H6X2 564 aa15.6■□□□□ 0.09
GGA3-220ENST00000613421 GOPCQ9HD26 462 aa15.6■□□□□ 0.09
GGA3-220ENST00000613421 ARHGAP31Q2M1Z3 1444 aa15.6■□□□□ 0.09
GGA3-220ENST00000613421 CNGA4Q8IV77 575 aa15.6■□□□□ 0.09
GGA3-220ENST00000613421 SEC62Q99442 399 aaKnown RBP15.6■□□□□ 0.09
GGA3-220ENST00000613421 ZC3H12CQ9C0D7 883 aaKnown RBP15.6■□□□□ 0.09
GGA3-220ENST00000613421 GNPATO15228 680 aa15.6■□□□□ 0.09
GGA3-220ENST00000613421 KRT86O43790 486 aa15.6■□□□□ 0.09
GGA3-220ENST00000613421 TRMT1LQ7Z2T5 733 aaKnown RBP15.6■□□□□ 0.09
GGA3-220ENST00000613421 ZNF274Q96GC6 653 aaPredicted RBP15.6■□□□□ 0.09
GGA3-220ENST00000613421 CCDC113Q9H0I3 377 aa15.6■□□□□ 0.09
GGA3-220ENST00000613421 COPRSQ9NQ92 184 aa15.6■□□□□ 0.09
GGA3-220ENST00000613421 V9GY48 417 aaPredicted RBP15.6■□□□□ 0.09
GGA3-220ENST00000613421 TACC1O75410 805 aa15.6■□□□□ 0.09
GGA3-220ENST00000613421 TTLL7Q6ZT98 887 aa15.6■□□□□ 0.09
GGA3-220ENST00000613421 GLI2P10070 1586 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 CPSF1Q10570 1443 aaKnown RBP15.59■□□□□ 0.09
GGA3-220ENST00000613421 GBP2P32456 591 aaPredicted RBP15.59■□□□□ 0.09
GGA3-220ENST00000613421 NLRP12P59046 1061 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 PRPF4BQ13523 1007 aaKnown RBP15.59■□□□□ 0.09
GGA3-220ENST00000613421 PRDM1O75626 825 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 PARP1P09874 1014 aaKnown RBP15.59■□□□□ 0.09
GGA3-220ENST00000613421 LMAN1P49257 510 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 FANCCQ00597 558 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 AKR1B15C9JRZ8 316 aaPredicted RBP15.59■□□□□ 0.09
GGA3-220ENST00000613421 RASEFQ8IZ41 740 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 DRC1Q96MC2 740 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 PLIN2Q99541 437 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 CDC42BPBQ9Y5S2 1711 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 POLR2DO15514 142 aaKnown RBP15.59■□□□□ 0.09
GGA3-220ENST00000613421 KIF5AQ12840 1032 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 SMARCC2Q8TAQ2 1214 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 DYDC1Q8WWB3 177 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 CCDC42Q96M95 316 aa15.59■□□□□ 0.09
GGA3-220ENST00000613421 PFKFB2O60825 505 aa15.58■□□□□ 0.09
GGA3-220ENST00000613421 CCDC172P0C7W6 258 aa15.58■□□□□ 0.09
GGA3-220ENST00000613421 ARHGEF25Q86VW2 580 aa15.58■□□□□ 0.09
GGA3-220ENST00000613421 MAP4K1Q92918 833 aa15.58■□□□□ 0.09
GGA3-220ENST00000613421 LUC7L2Q9Y383 392 aaKnown RBP15.58■□□□□ 0.09
GGA3-220ENST00000613421 HSPD1P10809 573 aaKnown RBP15.58■□□□□ 0.08
GGA3-220ENST00000613421 PPP2R5BQ15173 497 aa15.58■□□□□ 0.08
GGA3-220ENST00000613421 UBAP1LF5GYI3 381 aa15.58■□□□□ 0.08
GGA3-220ENST00000613421 CTSWP56202 376 aa15.58■□□□□ 0.08
GGA3-220ENST00000613421 PIK3AP1Q6ZUJ8 805 aa15.58■□□□□ 0.08
GGA3-220ENST00000613421 C17orf53Q8N3J3 647 aaPredicted RBP15.58■□□□□ 0.08
GGA3-220ENST00000613421 BCCIPQ9P287 314 aaKnown RBP eCLIP15.58■□□□□ 0.08
GGA3-220ENST00000613421 ANKRD62A6NC57 917 aa15.58■□□□□ 0.08
GGA3-220ENST00000613421 ZNF569Q5MCW4 686 aa15.58■□□□□ 0.08
GGA3-220ENST00000613421 PPP1R9BQ96SB3 815 aa15.58■□□□□ 0.08
GGA3-220ENST00000613421 CCDC94Q9BW85 323 aaPredicted RBP15.58■□□□□ 0.08
GGA3-220ENST00000613421 TEX11Q8IYF3 940 aa15.57■□□□□ 0.08
GGA3-220ENST00000613421 GUCA1BQ9UMX6 200 aa15.57■□□□□ 0.08
GGA3-220ENST00000613421 CTNND2Q9UQB3 1225 aa15.57■□□□□ 0.08
GGA3-220ENST00000613421 SPECC1Q5M775 1068 aa15.57■□□□□ 0.08
GGA3-220ENST00000613421 GAS2L3Q86XJ1 694 aa15.57■□□□□ 0.08
GGA3-220ENST00000613421 TAOK3Q9H2K8 898 aa15.57■□□□□ 0.08
GGA3-220ENST00000613421 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.57■□□□□ 0.082e-6■□□□□ 11
GGA3-220ENST00000613421 GSTTP1A0A1W2PQM5 241 aa15.57■□□□□ 0.08
GGA3-220ENST00000613421 MCM6Q14566 821 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms