RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 TRPM4Q8TD43 1214 aa12.52□□□□□ -0.41
SYNE1-240ENST00000610489 FSD1Q9BTV5 496 aa12.52□□□□□ -0.41
SYNE1-240ENST00000610489 GPBP1L1Q9HC44 474 aaPredicted RBP12.52□□□□□ -0.41
SYNE1-240ENST00000610489 DAGLAQ9Y4D2 1042 aa12.52□□□□□ -0.41
SYNE1-240ENST00000610489 MROH7-TTC4A0A0A0MT08 1334 aa12.52□□□□□ -0.41
SYNE1-240ENST00000610489 GAKO14976 1311 aa12.52□□□□□ -0.41
SYNE1-240ENST00000610489 RBM5P52756 815 aaKnown RBP eCLIP12.51□□□□□ -0.41
SYNE1-240ENST00000610489 DLGAP5Q15398 846 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 RBM26Q5T8P6 1007 aaKnown RBP12.51□□□□□ -0.41
SYNE1-240ENST00000610489 RILPL2Q969X0 211 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 FAM163AQ96GL9 167 aaPredicted RBP12.51□□□□□ -0.41
SYNE1-240ENST00000610489 ZBED3Q96IU2 234 aaPredicted RBP12.51□□□□□ -0.41
SYNE1-240ENST00000610489 ZDHHC15Q96MV8 337 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 PCDHAC2Q9Y5I4 1007 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 RFX7Q2KHR2 1363 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 TCRBV5S4A2TA0A5A2 114 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 WNT10BO00744 389 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 LDHCP07864 332 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 SDSP20132 328 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 CYP7A1P22680 504 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 ADD2P35612 726 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 ZSCAN25Q6NSZ9 544 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 USP50Q70EL3 339 aaPredicted RBP12.51□□□□□ -0.41
SYNE1-240ENST00000610489 ADGRA1Q86SQ6 560 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 FOCADQ5VW36 1801 aa12.51□□□□□ -0.41
SYNE1-240ENST00000610489 ZNF532Q9HCE3 1301 aa12.5□□□□□ -0.41
SYNE1-240ENST00000610489 CHGBP05060 677 aa12.5□□□□□ -0.41
SYNE1-240ENST00000610489 ZFYP08048 801 aaPredicted RBP12.5□□□□□ -0.41
SYNE1-240ENST00000610489 HIRAP54198 1017 aaPredicted RBP12.5□□□□□ -0.41
SYNE1-240ENST00000610489 UBE3CQ15386 1083 aa12.5□□□□□ -0.41
SYNE1-240ENST00000610489 LRRFIP1Q32MZ4 808 aaKnown RBP12.5□□□□□ -0.41
SYNE1-240ENST00000610489 NBPF9Q3BBW0 867 aa12.5□□□□□ -0.41
SYNE1-240ENST00000610489 BMP2KLQ5H9B9 411 aa12.5□□□□□ -0.41
SYNE1-240ENST00000610489 APOBEC3HQ6NTF7 200 aaKnown RBP12.5□□□□□ -0.41
SYNE1-240ENST00000610489 PNMA8AQ86V59 439 aaPredicted RBP12.5□□□□□ -0.41
SYNE1-240ENST00000610489 TICAM2Q86XR7 235 aa12.5□□□□□ -0.41
SYNE1-240ENST00000610489 PRMT6Q96LA8 375 aaPredicted RBP12.5□□□□□ -0.41
SYNE1-240ENST00000610489 GPR75-ASB3A0A0A6YYF3 556 aa12.49□□□□□ -0.41
SYNE1-240ENST00000610489 RNF113AO15541 343 aaKnown RBP12.49□□□□□ -0.41
SYNE1-240ENST00000610489 SLFNL1Q499Z3 407 aa12.49□□□□□ -0.41
SYNE1-240ENST00000610489 ZNF784Q8NCA9 323 aaPredicted RBP12.49□□□□□ -0.41
SYNE1-240ENST00000610489 BTDP43251 543 aa12.48□□□□□ -0.41
SYNE1-240ENST00000610489 EAPPQ56P03 285 aaPredicted RBP12.48□□□□□ -0.41
SYNE1-240ENST00000610489 NOL10Q9BSC4 688 aaKnown RBP12.48□□□□□ -0.41
SYNE1-240ENST00000610489 MYO1BO43795 1136 aa12.48□□□□□ -0.41
SYNE1-240ENST00000610489 MIGA1Q8NAN2 632 aa12.48□□□□□ -0.41
SYNE1-240ENST00000610489 APPBP2Q92624 585 aa12.48□□□□□ -0.41
SYNE1-240ENST00000610489 AATFQ9NY61 560 aaKnown RBP eCLIP12.48□□□□□ -0.41
SYNE1-240ENST00000610489 ASTN2O75129 1339 aaPredicted RBP12.48□□□□□ -0.41
SYNE1-240ENST00000610489 BAG3O95817 575 aa12.47□□□□□ -0.41
SYNE1-240ENST00000610489 POTEIP0CG38 1075 aa12.47□□□□□ -0.41
SYNE1-240ENST00000610489 POTEJP0CG39 1038 aa12.47□□□□□ -0.41
SYNE1-240ENST00000610489 PPP4CP60510 307 aa12.47□□□□□ -0.41
SYNE1-240ENST00000610489 NBR1Q14596 966 aa12.47□□□□□ -0.41
SYNE1-240ENST00000610489 CDC42EP5Q6NZY7 148 aa12.47□□□□□ -0.41
SYNE1-240ENST00000610489 HS6ST3Q8IZP7 471 aa12.47□□□□□ -0.41
SYNE1-240ENST00000610489 ZC3H15Q8WU90 426 aaKnown RBP12.47□□□□□ -0.41
SYNE1-240ENST00000610489 TDRD3Q9H7E2 651 aaKnown RBP12.47□□□□□ -0.41
SYNE1-240ENST00000610489 NAV1Q8NEY1 1877 aa12.47□□□□□ -0.41
SYNE1-240ENST00000610489 CLRN2A0PK11 232 aa12.46□□□□□ -0.41
SYNE1-240ENST00000610489 KIF3CO14782 793 aa12.46□□□□□ -0.41
SYNE1-240ENST00000610489 RHBDL3P58872 404 aa12.46□□□□□ -0.41
SYNE1-240ENST00000610489 ZMYM1Q5SVZ6 1142 aa12.46□□□□□ -0.41
SYNE1-240ENST00000610489 LDHDQ86WU2 507 aa12.46□□□□□ -0.41
SYNE1-240ENST00000610489 CERS3Q8IU89 383 aa12.46□□□□□ -0.41
SYNE1-240ENST00000610489 OSBP2Q969R2 916 aa12.46□□□□□ -0.41
SYNE1-240ENST00000610489 RIOK1Q9BRS2 568 aaKnown RBP12.46□□□□□ -0.41
SYNE1-240ENST00000610489 PUS7LQ9H0K6 701 aaKnown RBP12.46□□□□□ -0.41
SYNE1-240ENST00000610489 GGA3Q9NZ52 723 aa12.46□□□□□ -0.41
SYNE1-240ENST00000610489 ZNF70Q9UC06 446 aaPredicted RBP12.46□□□□□ -0.41
SYNE1-240ENST00000610489 PGAP2Q9UHJ9 254 aa12.46□□□□□ -0.41
SYNE1-240ENST00000610489 PITPNM2Q9BZ72 1349 aa12.46□□□□□ -0.41
SYNE1-240ENST00000610489 MYH1P12882 1939 aa12.46□□□□□ -0.41
SYNE1-240ENST00000610489 MAGEB6P1A0A0J9YX57 407 aa12.46□□□□□ -0.42
SYNE1-240ENST00000610489 HIP1O00291 1037 aa12.46□□□□□ -0.42
SYNE1-240ENST00000610489 PLCG2P16885 1265 aa12.46□□□□□ -0.42
SYNE1-240ENST00000610489 DYNLL1P63167 89 aaKnown RBP12.46□□□□□ -0.42
SYNE1-240ENST00000610489 ANGEL2Q5VTE6 544 aaKnown RBP12.46□□□□□ -0.42
SYNE1-240ENST00000610489 DIAPH3Q9NSV4 1193 aa12.46□□□□□ -0.42
SYNE1-240ENST00000610489 USP40Q9NVE5 1235 aa12.46□□□□□ -0.42
SYNE1-240ENST00000610489 TMOD2Q9NZR1 351 aa12.46□□□□□ -0.42
SYNE1-240ENST00000610489 BAZ2AQ9UIF9 1905 aaKnown RBP12.46□□□□□ -0.42
SYNE1-240ENST00000610489 A0A0D9SFI3 127 aa12.45□□□□□ -0.42
SYNE1-240ENST00000610489 M0R2C6 588 aa12.45□□□□□ -0.42
SYNE1-240ENST00000610489 MBD4O95243 580 aa12.45□□□□□ -0.42
SYNE1-240ENST00000610489 NMIQ13287 307 aaPredicted RBP12.45□□□□□ -0.42
SYNE1-240ENST00000610489 APOBEC3FQ8IUX4 373 aaKnown RBP12.45□□□□□ -0.42
SYNE1-240ENST00000610489 SH3RF3Q8TEJ3 882 aaPredicted RBP12.45□□□□□ -0.42
SYNE1-240ENST00000610489 AIDAQ96BJ3 306 aa12.45□□□□□ -0.42
SYNE1-240ENST00000610489 FAM227BQ96M60 508 aa12.45□□□□□ -0.42
SYNE1-240ENST00000610489 SEC62Q99442 399 aaKnown RBP12.45□□□□□ -0.42
SYNE1-240ENST00000610489 VEZTQ9HBM0 779 aa12.45□□□□□ -0.42
SYNE1-240ENST00000610489 CLEC11AQ9Y240 323 aa12.45□□□□□ -0.42
SYNE1-240ENST00000610489 DDX60LQ5H9U9 1706 aaKnown RBP12.44□□□□□ -0.42
SYNE1-240ENST00000610489 WDHD1O75717 1129 aaPredicted RBP12.44□□□□□ -0.42
SYNE1-240ENST00000610489 CACNB3P54284 484 aa12.44□□□□□ -0.42
SYNE1-240ENST00000610489 FKBP1CQ5VVH2 108 aa12.44□□□□□ -0.42
SYNE1-240ENST00000610489 POTEDQ86YR6 584 aa12.44□□□□□ -0.42
SYNE1-240ENST00000610489 TEX11Q8IYF3 940 aa12.44□□□□□ -0.42
SYNE1-240ENST00000610489 LCORLQ8N3X6 602 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms