RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 TCP10L2B9ZVM9 353 aa17.5■□□□□ 0.39
USE1-210ENST00000601662 NF2P35240 595 aa17.5■□□□□ 0.39
USE1-210ENST00000601662 ECE1P42892 770 aa17.5■□□□□ 0.39
USE1-210ENST00000601662 CACNB3P54284 484 aa17.5■□□□□ 0.39
USE1-210ENST00000601662 SPDYE2Q495Y8 402 aa17.5■□□□□ 0.39
USE1-210ENST00000601662 TBC1D9Q6ZT07 1266 aa17.5■□□□□ 0.39
USE1-210ENST00000601662 ZGPATQ8N5A5 531 aaKnown RBP17.5■□□□□ 0.39
USE1-210ENST00000601662 SPATA5Q8NB90 893 aa17.5■□□□□ 0.39
USE1-210ENST00000601662 EVI5LQ96CN4 794 aa17.5■□□□□ 0.39
USE1-210ENST00000601662 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.5■□□□□ 0.39
USE1-210ENST00000601662 PDS5AQ29RF7 1337 aaKnown RBP17.49■□□□□ 0.39
USE1-210ENST00000601662 UBE2Q2LH0YL09 131 aa17.49■□□□□ 0.39
USE1-210ENST00000601662 AOC2O75106 756 aa17.49■□□□□ 0.39
USE1-210ENST00000601662 MCAMP43121 646 aa17.49■□□□□ 0.39
USE1-210ENST00000601662 RASA3Q14644 834 aa17.49■□□□□ 0.39
USE1-210ENST00000601662 TTF1Q15361 905 aaPredicted RBP17.49■□□□□ 0.39
USE1-210ENST00000601662 HHIPL2Q6UWX4 724 aa17.49■□□□□ 0.39
USE1-210ENST00000601662 DZIP1Q86YF9 867 aaKnown RBP17.49■□□□□ 0.39
USE1-210ENST00000601662 ZDHHC15Q96MV8 337 aa17.49■□□□□ 0.39
USE1-210ENST00000601662 MRIQ9BWK5 157 aa17.49■□□□□ 0.39
USE1-210ENST00000601662 ARAP2Q8WZ64 1704 aa17.49■□□□□ 0.39
USE1-210ENST00000601662 SALL1Q9NSC2 1324 aa17.48■□□□□ 0.39
USE1-210ENST00000601662 IGSF3O75054 1194 aa17.48■□□□□ 0.39
USE1-210ENST00000601662 LRRFIP1Q32MZ4 808 aaKnown RBP17.48■□□□□ 0.39
USE1-210ENST00000601662 SPTY2D1Q68D10 685 aaPredicted RBP17.48■□□□□ 0.39
USE1-210ENST00000601662 APOBEC3HQ6NTF7 200 aaKnown RBP17.48■□□□□ 0.39
USE1-210ENST00000601662 ERICH6Q7L0X2 663 aa17.48■□□□□ 0.39
USE1-210ENST00000601662 TMOD2Q9NZR1 351 aa17.48■□□□□ 0.39
USE1-210ENST00000601662 FZD1Q9UP38 647 aa17.48■□□□□ 0.39
USE1-210ENST00000601662 DAGLAQ9Y4D2 1042 aa17.48■□□□□ 0.39
USE1-210ENST00000601662 GSPT1P15170 499 aaKnown RBP17.47■□□□□ 0.39
USE1-210ENST00000601662 SDSP20132 328 aa17.47■□□□□ 0.39
USE1-210ENST00000601662 ZNF157P51786 506 aaPredicted RBP17.47■□□□□ 0.39
USE1-210ENST00000601662 NBPF12Q5TAG4 269 aaPredicted RBP17.47■□□□□ 0.39
USE1-210ENST00000601662 RGMBQ6NW40 437 aa17.47■□□□□ 0.39
USE1-210ENST00000601662 RILPL2Q969X0 211 aa17.47■□□□□ 0.39
USE1-210ENST00000601662 DNAJC2Q99543 621 aaKnown RBP17.47■□□□□ 0.39
USE1-210ENST00000601662 PAG1Q9NWQ8 432 aa17.47■□□□□ 0.39
USE1-210ENST00000601662 RAI14Q9P0K7 980 aa17.47■□□□□ 0.39
USE1-210ENST00000601662 HSPA1AP0DMV8 641 aaKnown RBP17.46■□□□□ 0.39
USE1-210ENST00000601662 HSPA1BP0DMV9 641 aaKnown RBP17.46■□□□□ 0.39
USE1-210ENST00000601662 ZAP70P43403 619 aa17.46■□□□□ 0.39
USE1-210ENST00000601662 TNNI2P48788 182 aa17.46■□□□□ 0.39
USE1-210ENST00000601662 TNFAIP1Q13829 316 aa17.46■□□□□ 0.39
USE1-210ENST00000601662 SUPT20HL1Q3ZLR7 823 aa17.46■□□□□ 0.39
USE1-210ENST00000601662 HHIPL1Q96JK4 782 aa17.46■□□□□ 0.39
USE1-210ENST00000601662 LRP2BPQ9P2M1 347 aa17.46■□□□□ 0.39
USE1-210ENST00000601662 ANGEL1Q9UNK9 670 aaKnown RBP17.46■□□□□ 0.39
USE1-210ENST00000601662 HIP1O00291 1037 aa17.45■□□□□ 0.38
USE1-210ENST00000601662 GOLIM4O00461 696 aa17.45■□□□□ 0.38
USE1-210ENST00000601662 FKBP1BP68106 108 aa17.45■□□□□ 0.38
USE1-210ENST00000601662 MECOMQ03112 1051 aa17.45■□□□□ 0.38
USE1-210ENST00000601662 ARMC9Q7Z3E5 817 aa17.45■□□□□ 0.38
USE1-210ENST00000601662 TMEM39BQ9GZU3 492 aa17.45■□□□□ 0.38
USE1-210ENST00000601662 USP40Q9NVE5 1235 aa17.45■□□□□ 0.38
USE1-210ENST00000601662 PPP2R3BQ9Y5P8 575 aa17.45■□□□□ 0.38
USE1-210ENST00000601662 MAP4K4O95819 1239 aaPredicted RBP17.44■□□□□ 0.38
USE1-210ENST00000601662 ZSCAN25Q6NSZ9 544 aa17.44■□□□□ 0.38
USE1-210ENST00000601662 CDC42EP5Q6NZY7 148 aa17.44■□□□□ 0.38
USE1-210ENST00000601662 TMED8Q6PL24 325 aaPredicted RBP17.44■□□□□ 0.38
USE1-210ENST00000601662 CASC1Q6TDU7 716 aa17.44■□□□□ 0.38
USE1-210ENST00000601662 CDAN1Q8IWY9 1227 aa17.44■□□□□ 0.38
USE1-210ENST00000601662 SLF2Q8IX21 1173 aa17.44■□□□□ 0.38
USE1-210ENST00000601662 KBTBD3Q8NAB2 608 aa17.44■□□□□ 0.38
USE1-210ENST00000601662 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.44■□□□□ 0.38
USE1-210ENST00000601662 NDUFB9Q9Y6M9 179 aa17.44■□□□□ 0.38
USE1-210ENST00000601662 PCNTO95613 3336 aa17.44■□□□□ 0.38
USE1-210ENST00000601662 ECM29Q5VYK3 1845 aa17.43■□□□□ 0.38
USE1-210ENST00000601662 PPP1R12BO60237 982 aaPredicted RBP17.43■□□□□ 0.38
USE1-210ENST00000601662 EIF5BO60841 1220 aaKnown RBP17.43■□□□□ 0.38
USE1-210ENST00000601662 CYP2E1P05181 493 aaPredicted RBP17.43■□□□□ 0.38
USE1-210ENST00000601662 TCP10Q12799 353 aa17.43■□□□□ 0.38
USE1-210ENST00000601662 CCDC102AQ96A19 550 aa17.43■□□□□ 0.38
USE1-210ENST00000601662 ZIC5Q96T25 663 aa17.43■□□□□ 0.38
USE1-210ENST00000601662 FSD1Q9BTV5 496 aa17.43■□□□□ 0.38
USE1-210ENST00000601662 ZFYP08048 801 aaPredicted RBP17.42■□□□□ 0.38
USE1-210ENST00000601662 MAP3K12Q12852 859 aa17.42■□□□□ 0.38
USE1-210ENST00000601662 AIDAQ96BJ3 306 aa17.42■□□□□ 0.38
USE1-210ENST00000601662 CDC45O75419 566 aa17.41■□□□□ 0.38
USE1-210ENST00000601662 LDHCP07864 332 aa17.41■□□□□ 0.38
USE1-210ENST00000601662 MAP2K2P36507 400 aa17.41■□□□□ 0.38
USE1-210ENST00000601662 BTDP43251 543 aa17.41■□□□□ 0.38
USE1-210ENST00000601662 GSTO1P78417 241 aa17.41■□□□□ 0.38
USE1-210ENST00000601662 MAP2K1Q02750 393 aaPredicted RBP17.41■□□□□ 0.38
USE1-210ENST00000601662 NFIAQ12857 509 aa17.41■□□□□ 0.38
USE1-210ENST00000601662 MKRN3Q13064 507 aaKnown RBP17.41■□□□□ 0.38
USE1-210ENST00000601662 NOGQ13253 232 aa17.41■□□□□ 0.38
USE1-210ENST00000601662 ZNF384Q8TF68 577 aa17.41■□□□□ 0.38
USE1-210ENST00000601662 NSUN4Q96CB9 384 aaKnown RBP17.41■□□□□ 0.38
USE1-210ENST00000601662 EDC3Q96F86 508 aaKnown RBP17.41■□□□□ 0.38
USE1-210ENST00000601662 TEPSINQ96N21 525 aa17.41■□□□□ 0.38
USE1-210ENST00000601662 ANTXR1Q9H6X2 564 aa17.41■□□□□ 0.38
USE1-210ENST00000601662 PIH1D3Q9NQM4 214 aaKnown RBP17.41■□□□□ 0.38
USE1-210ENST00000601662 MYH2Q9UKX2 1941 aa17.41■□□□□ 0.38
USE1-210ENST00000601662 RFX7Q2KHR2 1363 aa17.4■□□□□ 0.38
USE1-210ENST00000601662 PAPPA2Q9BXP8 1791 aa17.4■□□□□ 0.38
USE1-210ENST00000601662 FAM155AB1AL88 458 aaPredicted RBP17.4■□□□□ 0.38
USE1-210ENST00000601662 USP2O75604 605 aaPredicted RBP17.4■□□□□ 0.38
USE1-210ENST00000601662 KIF23Q02241 960 aaPredicted RBP17.4■□□□□ 0.38
USE1-210ENST00000601662 RUFY2Q8WXA3 655 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms