RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, human

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-215	ENST00000599138	ABCF2	Q9UG63	623 aa		11.92	□□□□□ -0.5
VRK3-215	ENST00000599138	ANGEL1	Q9UNK9	670 aa	Known RBP	11.92	□□□□□ -0.5
VRK3-215	ENST00000599138	FZD1	Q9UP38	647 aa		11.92	□□□□□ -0.5
VRK3-215	ENST00000599138	RPAP1	Q9BWH6	1393 aa	Predicted RBP	11.92	□□□□□ -0.5
VRK3-215	ENST00000599138	CA12	O43570	354 aa		11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	HSPA8	P11142	646 aa	Known RBP	11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	RRP1	P56182	461 aa	Known RBP	11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	MECOM	Q03112	1051 aa		11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	PRKG1	Q13976	671 aa		11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	TBC1D9	Q6ZT07	1266 aa		11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	ERICH6	Q7L0X2	663 aa		11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	CSRNP1	Q96S65	589 aa		11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	PRDM10	Q9NQV6	1147 aa		11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	TMOD2	Q9NZR1	351 aa		11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	RFX7	Q2KHR2	1363 aa		11.91	□□□□□ -0.5
VRK3-215	ENST00000599138	GPR75-ASB3	A0A0A6YYF3	556 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	IGSF3	O75054	1194 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	RAB11FIP3	O75154	756 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	IREB2	P48200	963 aa	Known RBP	11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	NFIA	Q12857	509 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	TTC39A	Q5SRH9	613 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	DZIP1	Q86YF9	867 aa	Known RBP	11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	SLF2	Q8IX21	1173 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	REM2	Q8IYK8	340 aa	Predicted RBP	11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	FAM151A	Q8WW52	585 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	NSUN4	Q96CB9	384 aa	Known RBP	11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	KIF1BP	Q96EK5	621 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	BEGAIN	Q9BUH8	593 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	IDI2	Q9BXS1	227 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	USP40	Q9NVE5	1235 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	FAM198A	Q9UFP1	575 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	MYO5A	Q9Y4I1	1855 aa	Known RBP	11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	OTOF	Q9HC10	1997 aa		11.9	□□□□□ -0.5
VRK3-215	ENST00000599138	MROH7-TTC4	A0A0A0MT08	1334 aa		11.89	□□□□□ -0.51
VRK3-215	ENST00000599138	CYP2E1	P05181	493 aa	Predicted RBP	11.89	□□□□□ -0.51
VRK3-215	ENST00000599138	LBX1	P52954	281 aa		11.89	□□□□□ -0.51
VRK3-215	ENST00000599138	SPRYD7	Q5W111	196 aa		11.89	□□□□□ -0.51
VRK3-215	ENST00000599138	AACS	Q86V21	672 aa		11.89	□□□□□ -0.51
VRK3-215	ENST00000599138	CLMN	Q96JQ2	1002 aa		11.89	□□□□□ -0.51
VRK3-215	ENST00000599138	IL1RAPL2	Q9NP60	686 aa		11.89	□□□□□ -0.51
VRK3-215	ENST00000599138	SNRK	Q9NRH2	765 aa		11.89	□□□□□ -0.51
VRK3-215	ENST00000599138	LAMB1	P07942	1786 aa		11.89	□□□□□ -0.51
VRK3-215	ENST00000599138	AK9	Q5TCS8	1911 aa		11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	WDHD1	O75717	1129 aa	Predicted RBP	11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	LDHC	P07864	332 aa		11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	BTD	P43251	543 aa		11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	ZAP70	P43403	619 aa		11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	TM4SF4	P48230	202 aa		11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	RHBDL3	P58872	404 aa		11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	GSTO1	P78417	241 aa		11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	ANKRD13A	Q8IZ07	590 aa		11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	CLASRP	Q8N2M8	674 aa	Known RBP	11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	SLC10A4	Q96EP9	437 aa		11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	SAGE1	Q9NXZ1	904 aa		11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	RAI14	Q9P0K7	980 aa		11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	CASP8AP2	Q9UKL3	1982 aa		11.88	□□□□□ -0.51
VRK3-215	ENST00000599138	ENTPD3	O75355	529 aa		11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	NPM3	O75607	178 aa	Known RBP	11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	MAP4K4	O95819	1239 aa	Predicted RBP	11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	ZBTB48	P10074	688 aa	Predicted RBP	11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	MAP3K9	P80192	1104 aa		11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	ZFPM1	Q8IX07	1006 aa		11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	HOOK2	Q96ED9	719 aa		11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	WNK4	Q96J92	1243 aa		11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	DCTPP1	Q9H773	170 aa		11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	PIH1D3	Q9NQM4	214 aa	Known RBP	11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	RNF186	Q9NXI6	227 aa		11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	LRP2BP	Q9P2M1	347 aa		11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	MAST2	Q6P0Q8	1798 aa		11.87	□□□□□ -0.51
VRK3-215	ENST00000599138	APBB1	O00213	710 aa		11.86	□□□□□ -0.51
VRK3-215	ENST00000599138	GJA5	P36382	358 aa		11.86	□□□□□ -0.51
VRK3-215	ENST00000599138	RGS3	P49796	1198 aa		11.86	□□□□□ -0.51
VRK3-215	ENST00000599138	TCP10	Q12799	353 aa		11.86	□□□□□ -0.51
VRK3-215	ENST00000599138	SH3BP5L	Q7L8J4	393 aa		11.86	□□□□□ -0.51
VRK3-215	ENST00000599138	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	11.86	□□□□□ -0.51
VRK3-215	ENST00000599138	DDX4	Q9NQI0	724 aa	Known RBP	11.86	□□□□□ -0.51
VRK3-215	ENST00000599138	TSKS	Q9UJT2	592 aa		11.86	□□□□□ -0.51
VRK3-215	ENST00000599138	ZNF112	Q9UJU3	913 aa		11.86	□□□□□ -0.51
VRK3-215	ENST00000599138	PCDHB15	Q9Y5E8	787 aa		11.86	□□□□□ -0.51
VRK3-215	ENST00000599138	ATRNL1	Q5VV63	1379 aa		11.86	□□□□□ -0.51
VRK3-215	ENST00000599138	DOCK2	Q92608	1830 aa		11.86	□□□□□ -0.51
VRK3-215	ENST00000599138	PPP4C	P60510	307 aa		11.85	□□□□□ -0.51
VRK3-215	ENST00000599138	MAP3K10	Q02779	954 aa		11.85	□□□□□ -0.51
VRK3-215	ENST00000599138	VGLL4	Q14135	290 aa		11.85	□□□□□ -0.51
VRK3-215	ENST00000599138	DCAF15	Q66K64	600 aa		11.85	□□□□□ -0.51
VRK3-215	ENST00000599138	ADGRA1	Q86SQ6	560 aa		11.85	□□□□□ -0.51
VRK3-215	ENST00000599138	MANSC4	A6NHS7	340 aa	Predicted RBP	11.84	□□□□□ -0.51
VRK3-215	ENST00000599138	TRPA1	O75762	1119 aa		11.84	□□□□□ -0.51
VRK3-215	ENST00000599138	IFIT2	P09913	472 aa	Known RBP	11.84	□□□□□ -0.51
VRK3-215	ENST00000599138	INHBE	P58166	350 aa		11.84	□□□□□ -0.51
VRK3-215	ENST00000599138	SREBF2	Q12772	1141 aa		11.84	□□□□□ -0.51
VRK3-215	ENST00000599138	MKRN3	Q13064	507 aa	Known RBP	11.84	□□□□□ -0.51
VRK3-215	ENST00000599138	NAA16	Q6N069	864 aa	Predicted RBP	11.84	□□□□□ -0.51
VRK3-215	ENST00000599138	TMED8	Q6PL24	325 aa	Predicted RBP	11.84	□□□□□ -0.51
VRK3-215	ENST00000599138	MIGA2	Q7L4E1	593 aa		11.84	□□□□□ -0.51
VRK3-215	ENST00000599138	CRBN	Q96SW2	442 aa		11.84	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms