RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 CCDC66A2RUB6 948 aa15.27■□□□□ 0.04
VRK3-209ENST00000594948 BIN1O00499 593 aa15.27■□□□□ 0.04
VRK3-209ENST00000594948 LMOD1P29536 600 aaPredicted RBP15.27■□□□□ 0.04
VRK3-209ENST00000594948 HAND2P61296 217 aa15.27■□□□□ 0.04
VRK3-209ENST00000594948 TRDNQ13061 729 aa15.27■□□□□ 0.04
VRK3-209ENST00000594948 OLFM4Q6UX06 510 aa15.27■□□□□ 0.04
VRK3-209ENST00000594948 NOL10Q9BSC4 688 aaKnown RBP15.27■□□□□ 0.04
VRK3-209ENST00000594948 ALG1Q9BT22 464 aa15.27■□□□□ 0.04
VRK3-209ENST00000594948 PUS3Q9BZE2 481 aaKnown RBP15.27■□□□□ 0.04
VRK3-209ENST00000594948 C19orf44Q9H6X5 657 aa15.27■□□□□ 0.04
VRK3-209ENST00000594948 DNAI1Q9UI46 699 aa15.27■□□□□ 0.04
VRK3-209ENST00000594948 SH2B2O14492 632 aaPredicted RBP15.27■□□□□ 0.03
VRK3-209ENST00000594948 GPAA1O43292 621 aa15.27■□□□□ 0.03
VRK3-209ENST00000594948 ERCC6LQ2NKX8 1250 aa15.27■□□□□ 0.03
VRK3-209ENST00000594948 TRIM65Q6PJ69 517 aa15.27■□□□□ 0.03
VRK3-209ENST00000594948 SHC4Q6S5L8 630 aa15.27■□□□□ 0.03
VRK3-209ENST00000594948 VPS37DQ86XT2 251 aa15.27■□□□□ 0.03
VRK3-209ENST00000594948 TMEM87BQ96K49 555 aa15.27■□□□□ 0.03
VRK3-209ENST00000594948 MAP3K14Q99558 947 aa15.27■□□□□ 0.03
VRK3-209ENST00000594948 TNS3Q68CZ2 1445 aa15.26■□□□□ 0.03
VRK3-209ENST00000594948 NID2Q14112 1375 aa15.26■□□□□ 0.03
VRK3-209ENST00000594948 PCDH11XQ9BZA7 1347 aa15.26■□□□□ 0.03
VRK3-209ENST00000594948 PCDH11YQ9BZA8 1340 aa15.26■□□□□ 0.03
VRK3-209ENST00000594948 ARHGAP6O43182 974 aa15.26■□□□□ 0.03
VRK3-209ENST00000594948 PPFIA3O75145 1194 aa15.26■□□□□ 0.03
VRK3-209ENST00000594948 KRT40Q6A162 431 aa15.26■□□□□ 0.03
VRK3-209ENST00000594948 HOMER1Q86YM7 354 aa15.26■□□□□ 0.03
VRK3-209ENST00000594948 REXO1L1PQ8IX06 675 aa15.26■□□□□ 0.03
VRK3-209ENST00000594948 PUS7LQ9H0K6 701 aaKnown RBP15.26■□□□□ 0.03
VRK3-209ENST00000594948 HOOK1Q9UJC3 728 aaKnown RBP15.26■□□□□ 0.03
VRK3-209ENST00000594948 RIC1Q4ADV7 1423 aa15.25■□□□□ 0.03
VRK3-209ENST00000594948 EFCAB8A8MWE9 144 aa15.25■□□□□ 0.03
VRK3-209ENST00000594948 ZRANB2O95218 330 aaKnown RBP eCLIP15.25■□□□□ 0.03
VRK3-209ENST00000594948 SERPINC1P01008 464 aa15.25■□□□□ 0.03
VRK3-209ENST00000594948 CSF1RP07333 972 aa15.25■□□□□ 0.03
VRK3-209ENST00000594948 ADORA1P30542 326 aa15.25■□□□□ 0.03
VRK3-209ENST00000594948 ZAP70P43403 619 aa15.25■□□□□ 0.03
VRK3-209ENST00000594948 METAP2P50579 478 aaKnown RBP eCLIP15.25■□□□□ 0.03
VRK3-209ENST00000594948 CLCN6P51797 869 aa15.25■□□□□ 0.03
VRK3-209ENST00000594948 TTF1Q15361 905 aaPredicted RBP15.25■□□□□ 0.03
VRK3-209ENST00000594948 MPHOSPH8Q99549 860 aa15.25■□□□□ 0.03
VRK3-209ENST00000594948 FHOD1Q9Y613 1164 aa15.25■□□□□ 0.03
VRK3-209ENST00000594948 PCCAP05165 728 aaPredicted RBP15.24■□□□□ 0.03
VRK3-209ENST00000594948 TOP1P11387 765 aaKnown RBP15.24■□□□□ 0.03
VRK3-209ENST00000594948 ATP1A3P13637 1013 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 ADD2P35612 726 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 TBX2Q13207 712 aaPredicted RBP15.24■□□□□ 0.03
VRK3-209ENST00000594948 TCIRG1Q13488 830 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 CCDC102BQ68D86 513 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 KRBA2Q6ZNG9 492 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 PROSER2Q86WR7 435 aaPredicted RBP15.24■□□□□ 0.03
VRK3-209ENST00000594948 UBXN4Q92575 508 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 IGSF3O75054 1194 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 TADA3O75528 432 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 NKX1-1Q15270 411 aaPredicted RBP15.24■□□□□ 0.03
VRK3-209ENST00000594948 UBE3CQ15386 1083 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 CFAP100Q494V2 611 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 ARHGAP29Q52LW3 1261 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 APOA5Q6Q788 366 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 SGMS1Q86VZ5 419 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 TMEM139Q8IV31 216 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 DPF2Q92785 391 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 NBPF3Q9H094 633 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 ZBTB3Q9H5J0 574 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 DACH1Q9UI36 760 aa15.24■□□□□ 0.03
VRK3-209ENST00000594948 MARCKSP29966 332 aaPredicted RBP15.23■□□□□ 0.03
VRK3-209ENST00000594948 TRIM29Q14134 588 aa15.23■□□□□ 0.03
VRK3-209ENST00000594948 SCARF1Q14162 830 aa15.23■□□□□ 0.03
VRK3-209ENST00000594948 ALX1Q15699 326 aa15.23■□□□□ 0.03
VRK3-209ENST00000594948 METTL16Q86W50 562 aaKnown RBP15.23■□□□□ 0.03
VRK3-209ENST00000594948 MNS1Q8NEH6 495 aa15.23■□□□□ 0.03
VRK3-209ENST00000594948 WASF1Q92558 559 aa15.23■□□□□ 0.03
VRK3-209ENST00000594948 GJB4Q9NTQ9 266 aa15.23■□□□□ 0.03
VRK3-209ENST00000594948 MYH6P13533 1939 aa15.23■□□□□ 0.03
VRK3-209ENST00000594948 COL22A1Q8NFW1 1626 aaPredicted RBP15.23■□□□□ 0.03
VRK3-209ENST00000594948 CDHR2Q9BYE9 1310 aa15.23■□□□□ 0.03
VRK3-209ENST00000594948 STX10O60499 249 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 A1BGP04217 495 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 PNMA6AP0CW24 399 aaPredicted RBP15.22■□□□□ 0.03
VRK3-209ENST00000594948 PNOCQ13519 176 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 NTRK3Q16288 839 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 NT5DC1Q5TFE4 455 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 TMCO3Q6UWJ1 677 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 CYB5R4Q7L1T6 521 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 TRIML1Q8N9V2 468 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.22■□□□□ 0.03
VRK3-209ENST00000594948 PARP3Q9Y6F1 533 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 ZBTB43O43298 467 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 IARSP41252 1262 aaKnown RBP15.22■□□□□ 0.03
VRK3-209ENST00000594948 LIFRP42702 1097 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 GNL2Q13823 731 aaKnown RBP15.22■□□□□ 0.03
VRK3-209ENST00000594948 CT47A1Q5JQC4 288 aaPredicted RBP15.22■□□□□ 0.03
VRK3-209ENST00000594948 TBC1D10CQ8IV04 446 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 KRI1Q8N9T8 703 aaKnown RBP15.22■□□□□ 0.03
VRK3-209ENST00000594948 MLKLQ8NB16 471 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 LRRN4CLQ8ND94 238 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 CNNM3Q8NE01 707 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 KCNH3Q9ULD8 1083 aa15.22■□□□□ 0.03
VRK3-209ENST00000594948 MDM2Q00987 491 aaPredicted RBP15.21■□□□□ 0.03
VRK3-209ENST00000594948 IFIT5Q13325 482 aaKnown RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms