RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 DAGLAQ9Y4D2 1042 aa15.54■□□□□ 0.08
UPF1-203ENST00000594504 SPDYE5A6NIY4 337 aa15.53■□□□□ 0.08
UPF1-203ENST00000594504 IRF6O14896 467 aa15.53■□□□□ 0.08
UPF1-203ENST00000594504 ECM2O94769 699 aaPredicted RBP15.53■□□□□ 0.08
UPF1-203ENST00000594504 ADORA1P30542 326 aa15.53■□□□□ 0.08
UPF1-203ENST00000594504 INPP5BP32019 993 aa15.53■□□□□ 0.08
UPF1-203ENST00000594504 PHKA1P46020 1223 aa15.53■□□□□ 0.08
UPF1-203ENST00000594504 NFIAQ12857 509 aa15.53■□□□□ 0.08
UPF1-203ENST00000594504 ATF7IPQ6VMQ6 1270 aa15.53■□□□□ 0.08
UPF1-203ENST00000594504 FRAT1Q92837 279 aaPredicted RBP15.53■□□□□ 0.08
UPF1-203ENST00000594504 ZFYVE28Q9HCC9 887 aa15.53■□□□□ 0.08
UPF1-203ENST00000594504 AK9Q5TCS8 1911 aa15.53■□□□□ 0.08
UPF1-203ENST00000594504 BTBD19C9JJ37 291 aa15.52■□□□□ 0.08
UPF1-203ENST00000594504 CIAO1O76071 339 aa15.52■□□□□ 0.08
UPF1-203ENST00000594504 TIMM10P62072 90 aa15.52■□□□□ 0.08
UPF1-203ENST00000594504 FKBP1CQ5VVH2 108 aa15.52■□□□□ 0.08
UPF1-203ENST00000594504 ERO1BQ86YB8 467 aa15.52■□□□□ 0.08
UPF1-203ENST00000594504 ZFPM1Q8IX07 1006 aa15.52■□□□□ 0.08
UPF1-203ENST00000594504 FAM151AQ8WW52 585 aa15.52■□□□□ 0.08
UPF1-203ENST00000594504 YTHDC1Q96MU7 727 aaKnown RBP15.52■□□□□ 0.08
UPF1-203ENST00000594504 USP40Q9NVE5 1235 aa15.52■□□□□ 0.08
UPF1-203ENST00000594504 LDHBP07195 334 aaKnown RBP15.51■□□□□ 0.07
UPF1-203ENST00000594504 TRIM27P14373 513 aa15.51■□□□□ 0.07
UPF1-203ENST00000594504 IL15P40933 162 aaPredicted RBP15.51■□□□□ 0.07
UPF1-203ENST00000594504 ZKSCAN2Q63HK3 967 aa15.51■□□□□ 0.07
UPF1-203ENST00000594504 ZNF341Q9BYN7 854 aa15.51■□□□□ 0.07
UPF1-203ENST00000594504 ARHGAP39Q9C0H5 1083 aa15.51■□□□□ 0.07
UPF1-203ENST00000594504 FAM198AQ9UFP1 575 aa15.51■□□□□ 0.07
UPF1-203ENST00000594504 FBXO3Q9UK99 471 aa15.51■□□□□ 0.07
UPF1-203ENST00000594504 TNNQ9UQP3 1299 aa15.51■□□□□ 0.07
UPF1-203ENST00000594504 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.51■□□□□ 0.07
UPF1-203ENST00000594504 ZSWIM8A7E2V4 1837 aa15.51■□□□□ 0.07
UPF1-203ENST00000594504 CETPP11597 493 aa15.5■□□□□ 0.07
UPF1-203ENST00000594504 DCAF15Q66K64 600 aa15.5■□□□□ 0.07
UPF1-203ENST00000594504 CCDC102BQ68D86 513 aa15.5■□□□□ 0.07
UPF1-203ENST00000594504 COPRSQ9NQ92 184 aa15.5■□□□□ 0.07
UPF1-203ENST00000594504 GNL3LQ9NVN8 582 aaKnown RBP15.5■□□□□ 0.07
UPF1-203ENST00000594504 DENND2AQ9ULE3 1009 aa15.5■□□□□ 0.07
UPF1-203ENST00000594504 SLURP2P0DP57 97 aa15.49■□□□□ 0.07
UPF1-203ENST00000594504 EN2P19622 333 aaPredicted RBP15.49■□□□□ 0.07
UPF1-203ENST00000594504 PPIL2Q13356 520 aa15.49■□□□□ 0.07
UPF1-203ENST00000594504 SNAPC2Q13487 334 aa15.49■□□□□ 0.07
UPF1-203ENST00000594504 PRPF38BQ5VTL8 546 aaKnown RBP15.49■□□□□ 0.07
UPF1-203ENST00000594504 INTS3Q68E01 1043 aaKnown RBP15.49■□□□□ 0.07
UPF1-203ENST00000594504 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.49■□□□□ 0.07
UPF1-203ENST00000594504 HOOK2Q96ED9 719 aa15.49■□□□□ 0.07
UPF1-203ENST00000594504 PTCH2Q9Y6C5 1203 aa15.49■□□□□ 0.07
UPF1-203ENST00000594504 TLR2O60603 784 aa15.48■□□□□ 0.07
UPF1-203ENST00000594504 MYCP01106 439 aaPredicted RBP15.48■□□□□ 0.07
UPF1-203ENST00000594504 PPATQ06203 517 aa15.48■□□□□ 0.07
UPF1-203ENST00000594504 TFCP2Q12800 502 aa15.48■□□□□ 0.07
UPF1-203ENST00000594504 ARMC5Q96C12 935 aa15.48■□□□□ 0.07
UPF1-203ENST00000594504 ZNF112Q9UJU3 913 aa15.48■□□□□ 0.07
UPF1-203ENST00000594504 RCAN3Q9UKA8 241 aa15.48■□□□□ 0.07
UPF1-203ENST00000594504 MYH2Q9UKX2 1941 aa15.48■□□□□ 0.07
UPF1-203ENST00000594504 RPAP1Q9BWH6 1393 aaPredicted RBP15.48■□□□□ 0.07
UPF1-203ENST00000594504 SALL1Q9NSC2 1324 aa15.47■□□□□ 0.07
UPF1-203ENST00000594504 TNRC18O15417 2968 aaPredicted RBP15.47■□□□□ 0.07
UPF1-203ENST00000594504 SRGAP3O43295 1099 aa15.47■□□□□ 0.07
UPF1-203ENST00000594504 CLUAP1Q96AJ1 413 aa15.47■□□□□ 0.07
UPF1-203ENST00000594504 XAGE2Q96GT9 111 aa15.47■□□□□ 0.07
UPF1-203ENST00000594504 ABCF2Q9UG63 623 aa15.47■□□□□ 0.07
UPF1-203ENST00000594504 CPA4Q9UI42 421 aa15.47■□□□□ 0.07
UPF1-203ENST00000594504 A0A1B0GUL7 405 aa15.46■□□□□ 0.07
UPF1-203ENST00000594504 SEMA3EO15041 775 aa15.46■□□□□ 0.07
UPF1-203ENST00000594504 CTGFP29279 349 aa15.46■□□□□ 0.07
UPF1-203ENST00000594504 RGS3P49796 1198 aa15.46■□□□□ 0.07
UPF1-203ENST00000594504 RASGRF1Q13972 1273 aa15.46■□□□□ 0.07
UPF1-203ENST00000594504 SH3BP5LQ7L8J4 393 aa15.46■□□□□ 0.07
UPF1-203ENST00000594504 FTSJ3Q8IY81 847 aaKnown RBP15.46■□□□□ 0.07
UPF1-203ENST00000594504 HDAC5Q9UQL6 1122 aa15.46■□□□□ 0.07
UPF1-203ENST00000594504 PDHXO00330 501 aa15.45■□□□□ 0.06
UPF1-203ENST00000594504 LACTBP83111 547 aaPredicted RBP15.45■□□□□ 0.06
UPF1-203ENST00000594504 MOGSQ13724 837 aa15.45■□□□□ 0.06
UPF1-203ENST00000594504 C17orf99Q6UX52 265 aa15.45■□□□□ 0.06
UPF1-203ENST00000594504 SH3TC2Q8TF17 1288 aa15.45■□□□□ 0.06
UPF1-203ENST00000594504 ZNF333Q96JL9 665 aa15.45■□□□□ 0.06
UPF1-203ENST00000594504 NEUROD6Q96NK8 337 aa15.45■□□□□ 0.06
UPF1-203ENST00000594504 DDTLA6NHG4 134 aaPredicted RBP15.44■□□□□ 0.06
UPF1-203ENST00000594504 WDHD1O75717 1129 aaPredicted RBP15.44■□□□□ 0.06
UPF1-203ENST00000594504 GNAI3P08754 354 aa15.44■□□□□ 0.06
UPF1-203ENST00000594504 ARHGEF6Q15052 776 aa15.44■□□□□ 0.06
UPF1-203ENST00000594504 SLC9C1Q4G0N8 1177 aa15.44■□□□□ 0.06
UPF1-203ENST00000594504 ANKRD23Q86SG2 305 aa15.44■□□□□ 0.06
UPF1-203ENST00000594504 DZIP1Q86YF9 867 aaKnown RBP15.44■□□□□ 0.06
UPF1-203ENST00000594504 TMEM106CQ9BVX2 250 aa15.44■□□□□ 0.06
UPF1-203ENST00000594504 ZCCHC17Q9NP64 241 aaKnown RBP15.44■□□□□ 0.06
UPF1-203ENST00000594504 DDX4Q9NQI0 724 aaKnown RBP15.44■□□□□ 0.06
UPF1-203ENST00000594504 KCNH4Q9UQ05 1017 aa15.44■□□□□ 0.06
UPF1-203ENST00000594504 GAKO14976 1311 aa15.43■□□□□ 0.06
UPF1-203ENST00000594504 PNMA6EA0A0J9YXQ4 647 aa15.43■□□□□ 0.06
UPF1-203ENST00000594504 PHF20L1A8MW92 1017 aa15.43■□□□□ 0.06
UPF1-203ENST00000594504 BTDP43251 543 aa15.43■□□□□ 0.06
UPF1-203ENST00000594504 PICALMQ13492 652 aa15.43■□□□□ 0.06
UPF1-203ENST00000594504 KIF22Q14807 665 aa15.43■□□□□ 0.06
UPF1-203ENST00000594504 NOL9Q5SY16 702 aaKnown RBP15.43■□□□□ 0.06
UPF1-203ENST00000594504 PI16Q6UXB8 463 aa15.43■□□□□ 0.06
UPF1-203ENST00000594504 TBC1D9Q6ZT07 1266 aa15.43■□□□□ 0.06
UPF1-203ENST00000594504 ZSCAN29Q8IWY8 852 aaPredicted RBP15.43■□□□□ 0.06
UPF1-203ENST00000594504 ZGPATQ8N5A5 531 aaKnown RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms